Analysis of interatomic Contacts of Structural Units in PDB entry:
9YA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YA8 entry

There are 13 chains in PDB entry 9YA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	PHE 375
B	ASP 1	PHE 375
C	ASP 1	PHE 375
D	ASP 1	PHE 375
E	VAL 170	ILE 284
F	VAL 170	ILE 284
G	MET 1	LYS 70
H	MET 1	LYS 70
I	VAL 84	GLU 151
J	ALA 4	SER 810
K	ALA 4	SER 810
L	ILE 43	ALA 195
M	ILE 43	ALA 195

There are174 helices in PDB entry 9YA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	60	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	78	93	Right-handed alpha
Helix 4	AA4	A	113	128	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	194	197	Right-handed 310
Helix 9	AA9	A	202	217	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	252	257	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	263	268	Right-handed 310
Helix 14	AB5	A	273	285	Right-handed alpha
Helix 15	AB6	A	286	288	Right-handed 310
Helix 16	AB7	A	289	296	Right-handed alpha
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	337	348	Right-handed alpha
Helix 19	AC1	A	350	355	Right-handed 310
Helix 20	AC2	A	359	364	Right-handed alpha
Helix 21	AC3	A	365	369	Right-handed 310
Helix 22	AC4	B	55	61	Right-handed alpha
Helix 23	AC5	B	78	92	Right-handed alpha
Helix 24	AC6	B	97	101	Right-handed 310
Helix 25	AC7	B	112	127	Right-handed alpha
Helix 26	AC8	B	137	145	Right-handed alpha
Helix 27	AC9	B	181	193	Right-handed alpha
Helix 28	AD1	B	194	196	Right-handed 310
Helix 29	AD2	B	202	217	Right-handed alpha
Helix 30	AD3	B	222	233	Right-handed alpha
Helix 31	AD4	B	252	257	Right-handed alpha
Helix 32	AD5	B	258	262	Right-handed 310
Helix 33	AD6	B	263	267	Right-handed 310
Helix 34	AD7	B	273	284	Right-handed alpha
Helix 35	AD8	B	289	296	Right-handed alpha
Helix 36	AD9	B	301	306	Right-handed 310
Helix 37	AE1	B	308	321	Right-handed alpha
Helix 38	AE2	B	337	349	Right-handed alpha
Helix 39	AE3	B	351	356	Right-handed 310
Helix 40	AE4	B	359	364	Right-handed alpha
Helix 41	AE5	B	366	372	Right-handed 310
Helix 42	AE6	C	55	61	Right-handed alpha
Helix 43	AE7	C	78	92	Right-handed alpha
Helix 44	AE8	C	97	101	Right-handed 310
Helix 45	AE9	C	112	128	Right-handed alpha
Helix 46	AF1	C	137	145	Right-handed alpha
Helix 47	AF2	C	172	175	Right-handed 310
Helix 48	AF3	C	181	193	Right-handed alpha
Helix 49	AF4	C	194	197	Right-handed 310
Helix 50	AF5	C	202	217	Right-handed alpha
Helix 51	AF6	C	222	233	Right-handed alpha
Helix 52	AF7	C	252	257	Right-handed alpha
Helix 53	AF8	C	258	262	Right-handed 310
Helix 54	AF9	C	263	268	Right-handed 310
Helix 55	AG1	C	273	285	Right-handed alpha
Helix 56	AG2	C	289	296	Right-handed alpha
Helix 57	AG3	C	301	305	Right-handed 310
Helix 58	AG4	C	308	321	Right-handed alpha
Helix 59	AG5	C	334	336	Right-handed 310
Helix 60	AG6	C	337	348	Right-handed alpha
Helix 61	AG7	C	350	355	Right-handed 310
Helix 62	AG8	C	359	364	Right-handed alpha
Helix 63	AG9	C	366	372	Right-handed 310
Helix 64	AH1	D	55	61	Right-handed alpha
Helix 65	AH2	D	78	92	Right-handed alpha
Helix 66	AH3	D	97	101	Right-handed 310
Helix 67	AH4	D	112	126	Right-handed alpha
Helix 68	AH5	D	137	145	Right-handed alpha
Helix 69	AH6	D	172	175	Right-handed 310
Helix 70	AH7	D	181	193	Right-handed alpha
Helix 71	AH8	D	194	197	Right-handed 310
Helix 72	AH9	D	205	217	Right-handed alpha
Helix 73	AI1	D	223	233	Right-handed alpha
Helix 74	AI2	D	252	257	Right-handed alpha
Helix 75	AI3	D	258	262	Right-handed 310
Helix 76	AI4	D	263	268	Right-handed 310
Helix 77	AI5	D	273	283	Right-handed alpha
Helix 78	AI6	D	291	296	Right-handed alpha
Helix 79	AI7	D	301	306	Right-handed 310
Helix 80	AI8	D	308	321	Right-handed alpha
Helix 81	AI9	D	337	348	Right-handed alpha
Helix 82	AJ1	D	351	355	Right-handed 310
Helix 83	AJ2	D	359	366	Right-handed alpha
Helix 84	AJ3	D	367	370	Right-handed 310
Helix 85	AJ4	E	171	284	Right-handed alpha
Helix 86	AJ5	F	171	283	Right-handed alpha
Helix 87	AJ6	G	2	70	Right-handed alpha
Helix 88	AJ7	H	2	69	Right-handed alpha
Helix 89	AJ8	I	85	150	Right-handed alpha
Helix 90	AJ9	J	5	9	Right-handed 310
Helix 91	AK1	J	19	29	Right-handed alpha
Helix 92	AK2	J	74	76	Right-handed 310
Helix 93	AK3	J	81	85	Right-handed 310
Helix 94	AK4	J	97	111	Right-handed alpha
Helix 95	AK5	J	131	134	Right-handed 310
Helix 96	AK6	J	135	142	Right-handed alpha
Helix 97	AK7	J	153	169	Right-handed alpha
Helix 98	AK8	J	180	202	Right-handed alpha
Helix 99	AK9	J	206	210	Right-handed 310
Helix 100	AL1	J	215	231	Right-handed alpha
Helix 101	AL2	J	269	274	Right-handed 310
Helix 102	AL3	J	283	291	Right-handed alpha
Helix 103	AL4	J	294	301	Right-handed alpha
Helix 104	AL5	J	306	310	Right-handed 310
Helix 105	AL6	J	326	339	Right-handed alpha
Helix 106	AL7	J	342	360	Right-handed alpha
Helix 107	AL8	J	378	389	Right-handed alpha
Helix 108	AL9	J	391	399	Right-handed alpha
Helix 109	AM1	J	416	447	Right-handed alpha
Helix 110	AM2	J	472	505	Right-handed alpha
Helix 111	AM3	J	514	526	Right-handed alpha
Helix 112	AM4	J	529	537	Right-handed alpha
Helix 113	AM5	J	538	540	Right-handed 310
Helix 114	AM6	J	544	557	Right-handed alpha
Helix 115	AM7	J	592	598	Right-handed alpha
Helix 116	AM8	J	602	611	Right-handed alpha
Helix 117	AM9	J	614	621	Right-handed alpha
Helix 118	AN1	J	646	663	Right-handed alpha
Helix 119	AN2	J	685	696	Right-handed alpha
Helix 120	AN3	J	697	708	Right-handed alpha
Helix 121	AN4	J	715	723	Right-handed alpha
Helix 122	AN5	J	724	726	Right-handed 310
Helix 123	AN6	J	737	747	Right-handed alpha
Helix 124	AN7	J	768	810	Right-handed alpha
Helix 125	AN8	K	12	17	Right-handed alpha
Helix 126	AN9	K	19	27	Right-handed alpha
Helix 127	AO1	K	81	85	Right-handed 310
Helix 128	AO2	K	89	93	Right-handed 310
Helix 129	AO3	K	97	111	Right-handed alpha
Helix 130	AO4	K	131	134	Right-handed 310
Helix 131	AO5	K	135	142	Right-handed alpha
Helix 132	AO6	K	146	150	Right-handed 310
Helix 133	AO7	K	153	169	Right-handed alpha
Helix 134	AO8	K	180	201	Right-handed alpha
Helix 135	AO9	K	217	231	Right-handed alpha
Helix 136	AP1	K	270	274	Right-handed 310
Helix 137	AP2	K	283	291	Right-handed alpha
Helix 138	AP3	K	294	302	Right-handed alpha
Helix 139	AP4	K	324	340	Right-handed alpha
Helix 140	AP5	K	342	360	Right-handed alpha
Helix 141	AP6	K	378	388	Right-handed alpha
Helix 142	AP7	K	391	401	Right-handed alpha
Helix 143	AP8	K	416	447	Right-handed alpha
Helix 144	AP9	K	472	505	Right-handed alpha
Helix 145	AQ1	K	514	526	Right-handed alpha
Helix 146	AQ2	K	529	538	Right-handed alpha
Helix 147	AQ3	K	544	557	Right-handed alpha
Helix 148	AQ4	K	592	598	Right-handed alpha
Helix 149	AQ5	K	604	611	Right-handed alpha
Helix 150	AQ6	K	614	621	Right-handed alpha
Helix 151	AQ7	K	646	664	Right-handed alpha
Helix 152	AQ8	K	685	697	Right-handed alpha
Helix 153	AQ9	K	697	708	Right-handed alpha
Helix 154	AR1	K	715	721	Right-handed alpha
Helix 155	AR2	K	737	747	Right-handed alpha
Helix 156	AR3	K	768	810	Right-handed alpha
Helix 157	AR4	L	48	63	Right-handed alpha
Helix 158	AR5	L	76	84	Right-handed alpha
Helix 159	AR6	L	89	97	Right-handed alpha
Helix 160	AR7	L	101	106	Right-handed alpha
Helix 161	AR8	L	111	125	Right-handed alpha
Helix 162	AR9	L	130	139	Right-handed alpha
Helix 163	AS1	L	140	142	Right-handed 310
Helix 164	AS2	L	151	159	Right-handed alpha
Helix 165	AS3	L	166	175	Right-handed alpha
Helix 166	AS4	L	186	195	Right-handed alpha
Helix 167	AS5	M	48	63	Right-handed alpha
Helix 168	AS6	M	73	84	Right-handed alpha
Helix 169	AS7	M	101	107	Right-handed alpha
Helix 170	AS8	M	111	125	Right-handed alpha
Helix 171	AS9	M	130	142	Right-handed alpha
Helix 172	AT1	M	151	161	Right-handed alpha
Helix 173	AT2	M	167	174	Right-handed alpha
Helix 174	AT3	M	188	194	Right-handed alpha

There are 40 sheets in PDB entry 9YA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	248	250	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	16	20	anti-parallel
Strand 3	B	29	32	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	134	136	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	357	358	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	153	anti-parallel
Strand 4	B	297	299	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	245	250	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	16	19	anti-parallel
Strand 3	C	29	32	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	131	136	parallel
Strand 3	C	357	358	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	153	anti-parallel
Strand 4	C	297	299	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	245	250	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	149	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	245	250	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	68	72	first strand
Strand 2	J	58	63	anti-parallel
Strand 3	J	47	54	anti-parallel
Strand 4	J	36	39	anti-parallel
Strand 5	J	77	78	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	118	first strand
Strand 2	J	121	125	anti-parallel
Strand 3	J	666	673	parallel
Strand 4	J	172	177	parallel
Strand 5	J	455	462	parallel
Strand 6	J	245	252	anti-parallel
Strand 7	J	258	266	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	232	233	first strand
Strand 2	J	241	242	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	364	366	first strand
Strand 2	J	373	375	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	403	406	first strand
Strand 2	J	409	412	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	563	564	first strand
Strand 2	J	577	580	anti-parallel
Strand 3	J	585	588	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	711	714	first strand
Strand 2	J	762	765	anti-parallel
Strand 3	J	756	758	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	68	72	first strand
Strand 2	K	58	63	anti-parallel
Strand 3	K	47	54	anti-parallel
Strand 4	K	36	39	anti-parallel
Strand 5	K	77	78	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	115	118	first strand
Strand 2	K	121	125	anti-parallel
Strand 3	K	666	673	parallel
Strand 4	K	172	177	parallel
Strand 5	K	455	461	parallel
Strand 6	K	245	252	anti-parallel
Strand 7	K	258	266	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	233	first strand
Strand 2	K	241	242	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	364	366	first strand
Strand 2	K	373	375	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	403	406	first strand
Strand 2	K	409	412	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	563	564	first strand
Strand 2	K	577	580	anti-parallel
Strand 3	K	585	588	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	711	714	first strand
Strand 2	K	762	765	anti-parallel
Strand 3	K	756	758	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	73	first strand
Strand 2	L	109	110	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	150	first strand
Strand 2	L	183	185	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	148	150	first strand
Strand 2	M	183	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YA8