Analysis of interatomic Contacts of Structural Units in PDB entry:
9YAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YAE entry

There is 1 chain in PDB entry 9YAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 769
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9YAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
15 20Right-handed alpha
Helix 3
AA3
A
29 34Right-handed 310
Helix 4
AA4
A
47 57Right-handed alpha
Helix 5
AA5
A
66 72Right-handed alpha
Helix 6
AA6
A
76 81Right-handed alpha
Helix 7
AA7
A
91 99Right-handed alpha
Helix 8
AA8
A
110 118Right-handed alpha
Helix 9
AA9
A
167 172Right-handed alpha
Helix 10
AB1
A
192 206Right-handed alpha
Helix 11
AB2
A
245 252Right-handed alpha
Helix 12
AB3
A
264 272Right-handed alpha
Helix 13
AB4
A
297 302Right-handed alpha
Helix 14
AB5
A
327 337Right-handed alpha
Helix 15
AB6
A
352 364Right-handed alpha
Helix 16
AB7
A
383 387Right-handed 310
Helix 17
AB8
A
404 410Right-handed alpha
Helix 18
AB9
A
426 440Right-handed alpha
Helix 19
AC1
A
455 466Right-handed alpha
Helix 20
AC2
A
477 488Right-handed alpha
Helix 21
AC3
A
508 518Right-handed alpha
Helix 22
AC4
A
521 529Right-handed alpha
Helix 23
AC5
A
533 541Right-handed alpha
Helix 24
AC6
A
565 572Right-handed alpha
Helix 25
AC7
A
579 592Right-handed alpha
Helix 26
AC8
A
596 601Right-handed alpha
Helix 27
AC9
A
605 612Right-handed alpha
Helix 28
AD1
A
623 628Right-handed alpha
Helix 29
AD2
A
630 634Right-handed 310
Helix 30
AD3
A
639 649Right-handed alpha
Helix 31
AD4
A
655 664Right-handed alpha
Helix 32
AD5
A
665 671Right-handed alpha
Helix 33
AD6
A
676 694Right-handed alpha
Helix 34
AD7
A
699 716Right-handed alpha
Helix 35
AD8
A
735 744Right-handed alpha
Helix 36
AD9
A
751 755Right-handed 310
Helix 37
AE1
A
759 767Right-handed alpha
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There are 7 sheets in PDB entry 9YAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
257 258parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
207 210parallel
Strand 3
A
234 235parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
159 161parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
316 317anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
346 347parallel
Strand 3
A
447 448parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
392 396parallel
Strand 3
A
419 422parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
559 560anti-parallel
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