Analysis of interatomic Contacts of Structural Units in PDB entry:
9YB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YB0 entry

There are 2 chains in PDB entry 9YB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8ARG 767
B
 ASN 10ARG 767
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 74 helices in PDB entry 9YB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
45 58Right-handed alpha
Helix 3
AA3
A
65 73Right-handed alpha
Helix 4
AA4
A
76 86Right-handed alpha
Helix 5
AA5
A
91 102Right-handed alpha
Helix 6
AA6
A
114 119Right-handed alpha
Helix 7
AA7
A
151 156Right-handed alpha
Helix 8
AA8
A
167 173Right-handed alpha
Helix 9
AA9
A
183 192Right-handed alpha
Helix 10
AB1
A
192 202Right-handed alpha
Helix 11
AB2
A
218 226Right-handed alpha
Helix 12
AB3
A
242 252Right-handed alpha
Helix 13
AB4
A
262 274Right-handed alpha
Helix 14
AB5
A
294 299Right-handed alpha
Helix 15
AB6
A
300 305Right-handed alpha
Helix 16
AB7
A
329 340Right-handed alpha
Helix 17
AB8
A
350 364Right-handed alpha
Helix 18
AB9
A
380 388Right-handed alpha
Helix 19
AC1
A
402 411Right-handed alpha
Helix 20
AC2
A
428 440Right-handed alpha
Helix 21
AC3
A
456 466Right-handed alpha
Helix 22
AC4
A
479 484Right-handed alpha
Helix 23
AC5
A
489 493Right-handed 310
Helix 24
AC6
A
507 517Right-handed alpha
Helix 25
AC7
A
522 526Right-handed alpha
Helix 26
AC8
A
534 539Right-handed alpha
Helix 27
AC9
A
562 577Right-handed alpha
Helix 28
AD1
A
579 594Right-handed alpha
Helix 29
AD2
A
596 603Right-handed alpha
Helix 30
AD3
A
620 629Right-handed alpha
Helix 31
AD4
A
630 634Right-handed 310
Helix 32
AD5
A
638 644Right-handed alpha
Helix 33
AD6
A
645 647Right-handed 310
Helix 34
AD7
A
654 668Right-handed alpha
Helix 35
AD8
A
676 694Right-handed alpha
Helix 36
AD9
A
701 716Right-handed alpha
Helix 37
AE1
A
735 742Right-handed alpha
Helix 38
AE2
A
752 767Right-handed alpha
Helix 39
AE3
B
11 21Right-handed alpha
Helix 40
AE4
B
45 58Right-handed alpha
Helix 41
AE5
B
64 72Right-handed alpha
Helix 42
AE6
B
77 83Right-handed alpha
Helix 43
AE7
B
91 102Right-handed alpha
Helix 44
AE8
B
114 119Right-handed alpha
Helix 45
AE9
B
151 156Right-handed alpha
Helix 46
AF1
B
167 173Right-handed alpha
Helix 47
AF2
B
183 192Right-handed alpha
Helix 48
AF3
B
192 202Right-handed alpha
Helix 49
AF4
B
218 226Right-handed alpha
Helix 50
AF5
B
242 252Right-handed alpha
Helix 51
AF6
B
262 274Right-handed alpha
Helix 52
AF7
B
327 338Right-handed alpha
Helix 53
AF8
B
349 362Right-handed alpha
Helix 54
AF9
B
379 388Right-handed alpha
Helix 55
AG1
B
404 411Right-handed alpha
Helix 56
AG2
B
425 433Right-handed alpha
Helix 57
AG3
B
433 439Right-handed alpha
Helix 58
AG4
B
456 461Right-handed alpha
Helix 59
AG5
B
462 464Right-handed 310
Helix 60
AG6
B
477 490Right-handed alpha
Helix 61
AG7
B
491 493Right-handed 310
Helix 62
AG8
B
507 517Right-handed alpha
Helix 63
AG9
B
522 526Right-handed alpha
Helix 64
AH1
B
534 539Right-handed alpha
Helix 65
AH2
B
562 577Right-handed alpha
Helix 66
AH3
B
579 594Right-handed alpha
Helix 67
AH4
B
596 603Right-handed alpha
Helix 68
AH5
B
606 611Right-handed alpha
Helix 69
AH6
B
618 629Right-handed alpha
Helix 70
AH7
B
630 634Right-handed 310
Helix 71
AH8
B
654 668Right-handed alpha
Helix 72
AH9
B
676 694Right-handed alpha
Helix 73
AI1
B
701 716Right-handed alpha
Helix 74
AI2
B
755 765Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9YB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
159 162parallel
Strand 3
A
141 143parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
234 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
392 396parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 521first strand
Strand 2
A
557 558anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
207 210parallel
Strand 3
B
234 235parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
159 162parallel
Strand 3
B
141 143parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 395first strand
Strand 2
B
419 423parallel
Strand 3
B
343 345parallel
Strand 4
B
445 446parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 521first strand
Strand 2
B
557 558anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il