Analysis of interatomic Contacts of Structural Units in PDB entry:
9YBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YBG entry

There are 6 chains in PDB entry 9YBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1VAL 233
L
 GLU 1GLU 214
A
 GLY 1LEU 475
E
 GLN 1VAL 233
F
 GLU 1CYS 215
B
 GLY 1GLU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9YBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
65 68Right-handed 310
Helix 2
AA2
H
90 94Right-handed 310
Helix 3
AA3
H
178 180Right-handed 310
Helix 4
AA4
H
209 211Right-handed 310
Helix 5
AA5
H
223 226Right-handed 310
Helix 6
AA6
L
79 83Right-handed 310
Helix 7
AA7
L
122 128Right-handed alpha
Helix 8
AA8
L
184 189Right-handed alpha
Helix 9
AA9
A
3 8Right-handed alpha
Helix 10
AB1
A
12 18Right-handed alpha
Helix 11
AB2
A
41 47Right-handed alpha
Helix 12
AB3
A
50 52Right-handed 310
Helix 13
AB4
A
435 441Right-handed 310
Helix 14
AB5
E
65 68Right-handed 310
Helix 15
AB6
E
90 94Right-handed 310
Helix 16
AB7
E
178 180Right-handed 310
Helix 17
AB8
E
209 211Right-handed 310
Helix 18
AB9
E
223 226Right-handed 310
Helix 19
AC1
F
79 83Right-handed 310
Helix 20
AC2
F
122 127Right-handed alpha
Helix 21
AC3
F
184 189Right-handed alpha
Helix 22
AC4
B
3 8Right-handed alpha
Helix 23
AC5
B
12 20Right-handed alpha
Helix 24
AC6
B
41 47Right-handed alpha
Helix 25
AC7
B
50 52Right-handed 310
Helix 26
AC8
B
435 441Right-handed 310
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There are 28 sheets in PDB entry 9YBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
71 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
129 133parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
34 42anti-parallel
Strand 5
H
46 55anti-parallel
Strand 6
H
59 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
129 133parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
124 125anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 146first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
185 187anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 146first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
191 192anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
173 176first strand
Strand 2
H
217 222anti-parallel
Strand 3
H
227 232anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
98 99anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
206 211anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
54 55anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
459 462anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
473 474anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
71 76anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
129 133parallel
Strand 3
E
95 103anti-parallel
Strand 4
E
34 42anti-parallel
Strand 5
E
46 55anti-parallel
Strand 6
E
59 63anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
129 133parallel
Strand 3
E
95 103anti-parallel
Strand 4
E
124 125anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 146first strand
Strand 2
E
157 167anti-parallel
Strand 3
E
198 207anti-parallel
Strand 4
E
185 187anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 146first strand
Strand 2
E
157 167anti-parallel
Strand 3
E
198 207anti-parallel
Strand 4
E
191 192anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
173 176first strand
Strand 2
E
217 222anti-parallel
Strand 3
E
227 232anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 5first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
70 75anti-parallel
Strand 4
F
62 67anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
103 107parallel
Strand 3
F
84 90anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
45 49anti-parallel
Strand 6
F
53 54anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
103 107parallel
Strand 3
F
84 90anti-parallel
Strand 4
F
98 99anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
115 119first strand
Strand 2
F
130 140anti-parallel
Strand 3
F
174 183anti-parallel
Strand 4
F
160 164anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
154 155first strand
Strand 2
F
146 151anti-parallel
Strand 3
F
192 198anti-parallel
Strand 4
F
206 211anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
54 55anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 456first strand
Strand 2
B
459 462anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 467first strand
Strand 2
B
473 474anti-parallel
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