Analysis of interatomic Contacts of Structural Units in PDB entry:
9YBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YBL entry

There are 2 chains in PDB entry 9YBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 1336	GLU 1948
A	ASP 706	GLU 2527

There are 75 helices in PDB entry 9YBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1348	1356	Right-handed alpha
Helix 2	AA2	C	1398	1402	Right-handed 310
Helix 3	AA3	C	1404	1409	Right-handed 310
Helix 4	AA4	C	1434	1442	Right-handed alpha
Helix 5	AA5	C	1469	1473	Right-handed alpha
Helix 6	AA6	C	1494	1509	Right-handed alpha
Helix 7	AA7	C	1529	1540	Right-handed alpha
Helix 8	AA8	C	1551	1558	Right-handed alpha
Helix 9	AA9	C	1577	1581	Right-handed 310
Helix 10	AB1	C	1602	1607	Right-handed alpha
Helix 11	AB2	C	1608	1613	Right-handed alpha
Helix 12	AB3	C	1648	1656	Right-handed alpha
Helix 13	AB4	C	1704	1712	Right-handed alpha
Helix 14	AB5	C	1770	1791	Right-handed alpha
Helix 15	AB6	C	1827	1834	Right-handed alpha
Helix 16	AB7	C	1851	1855	Right-handed 310
Helix 17	AB8	C	1913	1925	Right-handed alpha
Helix 18	AB9	C	1940	1943	Right-handed 310
Helix 19	AC1	A	707	719	Right-handed alpha
Helix 20	AC2	A	721	730	Right-handed alpha
Helix 21	AC3	A	743	751	Right-handed alpha
Helix 22	AC4	A	754	764	Right-handed alpha
Helix 23	AC5	A	767	781	Right-handed alpha
Helix 24	AC6	A	786	795	Right-handed alpha
Helix 25	AC7	A	997	1001	Right-handed 310
Helix 26	AC8	A	1004	1010	Right-handed alpha
Helix 27	AC9	A	1011	1013	Right-handed 310
Helix 28	AD1	A	1027	1034	Right-handed alpha
Helix 29	AD2	A	1053	1057	Right-handed 310
Helix 30	AD3	A	1189	1194	Right-handed alpha
Helix 31	AD4	A	1240	1245	Right-handed 310
Helix 32	AD5	A	1263	1267	Right-handed 310
Helix 33	AD6	A	1286	1291	Right-handed 310
Helix 34	AD7	A	1307	1312	Right-handed alpha
Helix 35	AD8	A	1314	1328	Right-handed alpha
Helix 36	AD9	A	1347	1356	Right-handed alpha
Helix 37	AE1	A	1398	1402	Right-handed 310
Helix 38	AE2	A	1404	1409	Right-handed 310
Helix 39	AE3	A	1425	1431	Right-handed alpha
Helix 40	AE4	A	1431	1442	Right-handed alpha
Helix 41	AE5	A	1464	1471	Right-handed alpha
Helix 42	AE6	A	1494	1510	Right-handed alpha
Helix 43	AE7	A	1525	1538	Right-handed alpha
Helix 44	AE8	A	1549	1560	Right-handed alpha
Helix 45	AE9	A	1568	1580	Right-handed alpha
Helix 46	AF1	A	1645	1656	Right-handed alpha
Helix 47	AF2	A	1669	1673	Right-handed 310
Helix 48	AF3	A	1703	1706	Right-handed 310
Helix 49	AF4	A	1707	1714	Right-handed alpha
Helix 50	AF5	A	1770	1778	Right-handed alpha
Helix 51	AF6	A	1780	1792	Right-handed alpha
Helix 52	AF7	A	1792	1797	Right-handed alpha
Helix 53	AF8	A	1828	1833	Right-handed alpha
Helix 54	AF9	A	1865	1869	Right-handed 310
Helix 55	AG1	A	1871	1875	Right-handed 310
Helix 56	AG2	A	1912	1923	Right-handed alpha
Helix 57	AG3	A	1955	1959	Right-handed alpha
Helix 58	AG4	A	1962	1966	Right-handed 310
Helix 59	AG5	A	1969	1987	Right-handed alpha
Helix 60	AG6	A	2035	2039	Right-handed 310
Helix 61	AG7	A	2040	2045	Right-handed alpha
Helix 62	AG8	A	2053	2069	Right-handed alpha
Helix 63	AG9	A	2071	2077	Right-handed alpha
Helix 64	AH1	A	2079	2084	Right-handed alpha
Helix 65	AH2	A	2084	2089	Right-handed alpha
Helix 66	AH3	A	2094	2099	Right-handed alpha
Helix 67	AH4	A	2104	2106	Right-handed 310
Helix 68	AH5	A	2107	2115	Right-handed alpha
Helix 69	AH6	A	2125	2133	Right-handed alpha
Helix 70	AH7	A	2135	2139	Right-handed alpha
Helix 71	AH8	A	2161	2164	Right-handed 310
Helix 72	AH9	A	2346	2352	Right-handed alpha
Helix 73	AI1	A	2390	2394	Right-handed 310
Helix 74	AI2	A	2499	2521	Right-handed alpha
Helix 75	AI3	A	2522	2526	Right-handed 310

There are 22 sheets in PDB entry 9YBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1372	1376	first strand
Strand 2	C	1390	1394	anti-parallel
Strand 3	C	1337	1339	parallel
Strand 4	C	1414	1419	parallel
Strand 5	C	1447	1451	parallel
Strand 6	C	1482	1486	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1690	1697	first strand
Strand 2	C	1761	1768	anti-parallel
Strand 3	C	1748	1753	anti-parallel
Strand 4	C	1737	1740	anti-parallel
Strand 5	C	1731	1733	anti-parallel
Strand 6	A	1679	1680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1811	1814	first strand
Strand 2	C	1823	1826	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1840	1841	first strand
Strand 2	C	1849	1850	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1894	1895	first strand
Strand 2	C	1904	1906	anti-parallel
Strand 3	C	1944	1947	anti-parallel
Strand 4	C	1935	1939	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	804	first strand
Strand 2	A	986	988	parallel
Strand 3	A	1015	1017	parallel
Strand 4	A	1040	1041	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1065	first strand
Strand 2	A	1087	1090	parallel
Strand 3	A	1111	1113	parallel
Strand 4	A	1133	1135	parallel
Strand 5	A	1157	1159	parallel
Strand 6	A	1177	1179	parallel
Strand 7	A	1200	1202	parallel
Strand 8	A	1224	1226	parallel
Strand 9	A	1249	1251	parallel
Strand 10	A	1272	1274	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1329	1331	first strand
Strand 2	A	1522	1524	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1373	1380	first strand
Strand 2	A	1386	1393	anti-parallel
Strand 3	A	1334	1338	parallel
Strand 4	A	1414	1418	parallel
Strand 5	A	1447	1451	parallel
Strand 6	A	1482	1487	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1547	1548	first strand
Strand 2	A	1596	1597	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1732	1734	first strand
Strand 2	A	1737	1739	anti-parallel
Strand 3	A	1749	1753	anti-parallel
Strand 4	A	1761	1768	anti-parallel
Strand 5	A	1690	1697	anti-parallel
Strand 6	A	1810	1812	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1741	1743	first strand
Strand 2	A	1746	1747	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1850	1851	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1904	1907	first strand
Strand 2	A	1944	1947	anti-parallel
Strand 3	A	1935	1939	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1953	1954	first strand
Strand 2	A	2000	2002	anti-parallel
Strand 3	A	2013	2015	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2145	first strand
Strand 2	A	2492	2497	anti-parallel
Strand 3	A	2466	2474	anti-parallel
Strand 4	A	2455	2463	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2155	2157	first strand
Strand 2	A	2166	2169	anti-parallel
Strand 3	A	2182	2183	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2201	2204	first strand
Strand 2	A	2215	2218	anti-parallel
Strand 3	A	2223	2227	anti-parallel
Strand 4	A	2237	2240	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2250	first strand
Strand 2	A	2263	2267	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2315	2319	first strand
Strand 2	A	2322	2326	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2358	first strand
Strand 2	A	2364	2367	anti-parallel
Strand 3	A	2372	2375	anti-parallel
Strand 4	A	2385	2388	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2424	2429	anti-parallel
Strand 3	A	2434	2438	anti-parallel
Strand 4	A	2444	2448	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YBL