Analysis of interatomic Contacts of Structural Units in PDB entry:
9YBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YBP entry

There is 1 chain in PDB entry 9YBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1335GLU 2527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9YBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1424 1430Right-handed alpha
Helix 2
AA2
A
1431 1441Right-handed alpha
Helix 3
AA3
A
1468 1474Right-handed alpha
Helix 4
AA4
A
1475 1477Right-handed 310
Helix 5
AA5
A
1494 1509Right-handed alpha
Helix 6
AA6
A
1527 1541Right-handed alpha
Helix 7
AA7
A
1549 1560Right-handed alpha
Helix 8
AA8
A
1568 1580Right-handed alpha
Helix 9
AA9
A
1599 1613Right-handed alpha
Helix 10
AB1
A
1648 1656Right-handed alpha
Helix 11
AB2
A
1705 1715Right-handed alpha
Helix 12
AB3
A
1770 1792Right-handed alpha
Helix 13
AB4
A
1829 1833Right-handed alpha
Helix 14
AB5
A
1856 1861Right-handed alpha
Helix 15
AB6
A
1865 1870Right-handed alpha
Helix 16
AB7
A
1913 1925Right-handed alpha
Helix 17
AB8
A
1954 1962Right-handed alpha
Helix 18
AB9
A
1969 1988Right-handed alpha
Helix 19
AC1
A
2040 2045Right-handed alpha
Helix 20
AC2
A
2052 2069Right-handed alpha
Helix 21
AC3
A
2070 2079Right-handed alpha
Helix 22
AC4
A
2079 2089Right-handed alpha
Helix 23
AC5
A
2105 2115Right-handed alpha
Helix 24
AC6
A
2124 2134Right-handed alpha
Helix 25
AC7
A
2135 2138Right-handed 310
Helix 26
AC8
A
2346 2351Right-handed alpha
Helix 27
AC9
A
2389 2394Right-handed alpha
Helix 28
AD1
A
2499 2504Right-handed alpha
Helix 29
AD2
A
2504 2516Right-handed alpha
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There are 12 sheets in PDB entry 9YBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1391 1395first strand
Strand 2
A
1336 1340parallel
Strand 3
A
1414 1417parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1547 1548first strand
Strand 2
A
1596 1597anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1730 1734first strand
Strand 2
A
1737 1741anti-parallel
Strand 3
A
1749 1753anti-parallel
Strand 4
A
1761 1768anti-parallel
Strand 5
A
1690 1697anti-parallel
Strand 6
A
1809 1812anti-parallel
Strand 7
A
1827 1828anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1893 1898first strand
Strand 2
A
1901 1907anti-parallel
Strand 3
A
1944 1948anti-parallel
Strand 4
A
1937 1939anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2001 2002first strand
Strand 2
A
2013 2014anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2140 2143first strand
Strand 2
A
2494 2497anti-parallel
Strand 3
A
2466 2475anti-parallel
Strand 4
A
2454 2463anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2156 2157first strand
Strand 2
A
2166 2169anti-parallel
Strand 3
A
2180 2183anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2225 2227first strand
Strand 2
A
2235 2237anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2245 2247first strand
Strand 2
A
2266 2267anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2271 2274first strand
Strand 2
A
2289 2292anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2354 2358first strand
Strand 2
A
2364 2367anti-parallel
Strand 3
A
2374 2375anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2414 2419first strand
Strand 2
A
2425 2429anti-parallel
Strand 3
A
2434 2437anti-parallel
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