Analysis of interatomic Contacts of Structural Units in PDB entry:
9YBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YBU entry

There is 1 chain in PDB entry 9YBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1040PRO 1151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9YBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1043 1049Right-handed 310
Helix 2
AA2
A
1055 1070Right-handed alpha
Helix 3
AA3
A
1086 1098Right-handed alpha
Helix 4
AA4
A
1099 1107Right-handed alpha
Helix 5
AA5
A
1108 1116Right-handed alpha
Helix 6
AA6
A
1121 1136Right-handed alpha
Helix 7
AA7
A
1136 1146Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9YBU.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1079 1080first strand
Strand 2
A
1083 1084anti-parallel
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