Analysis of interatomic Contacts of Structural Units in PDB entry:
9YD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YD9 entry

There are 6 chains in PDB entry 9YD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 142SER 189
B
 SER 453SER 486
C
 LEU 142PRO 188
D
 LEU 454SER 486
E
 SER 144SER 189
F
 ILE 452SER 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9YD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 185Right-handed alpha
Helix 2
AA2
B
459 487Right-handed alpha
Helix 3
AA3
C
143 185Right-handed alpha
Helix 4
AA4
D
459 487Right-handed alpha
Helix 5
AA5
E
145 185Right-handed alpha
Helix 6
AA6
F
459 486Right-handed alpha
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There are no sheets in PDB entry 9YD9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il