Analysis of interatomic Contacts of Structural Units in PDB entry:
9YDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YDH entry

There are 2 chains in PDB entry 9YDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLY 295
B
 VAL 2GLY 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9YDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
24 42Right-handed alpha
Helix 3
AA3
A
45 63Right-handed alpha
Helix 4
AA4
A
70 87Right-handed alpha
Helix 5
AA5
A
112 127Right-handed alpha
Helix 6
AA6
A
141 152Right-handed alpha
Helix 7
AA7
A
153 155Right-handed 310
Helix 8
AA8
A
166 182Right-handed alpha
Helix 9
AA9
A
196 212Right-handed alpha
Helix 10
AB1
A
223 226Right-handed 310
Helix 11
AB2
A
227 239Right-handed alpha
Helix 12
AB3
A
254 265Right-handed alpha
Helix 13
AB4
A
285 295Right-handed alpha
Helix 14
AB5
B
3 19Right-handed alpha
Helix 15
AB6
B
24 42Right-handed alpha
Helix 16
AB7
B
45 63Right-handed alpha
Helix 17
AB8
B
70 87Right-handed alpha
Helix 18
AB9
B
112 127Right-handed alpha
Helix 19
AC1
B
142 152Right-handed alpha
Helix 20
AC2
B
153 155Right-handed 310
Helix 21
AC3
B
166 182Right-handed alpha
Helix 22
AC4
B
196 212Right-handed alpha
Helix 23
AC5
B
223 226Right-handed 310
Helix 24
AC6
B
227 239Right-handed alpha
Helix 25
AC7
B
254 265Right-handed alpha
Helix 26
AC8
B
285 295Right-handed alpha
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There are 2 sheets in PDB entry 9YDH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
131 136parallel
Strand 3
A
185 190parallel
Strand 4
A
101 106parallel
Strand 5
A
215 221parallel
Strand 6
A
242 247parallel
Strand 7
A
269 273parallel
Strand 8
A
281 283anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
131 135parallel
Strand 3
B
185 189parallel
Strand 4
B
101 107parallel
Strand 5
B
215 221parallel
Strand 6
B
242 247parallel
Strand 7
B
269 273parallel
Strand 8
B
281 283anti-parallel
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