Analysis of interatomic Contacts of Structural Units in PDB entry:
9YDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YDZ entry

There are 8 chains in PDB entry 9YDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9ASN 366
B
 LEU 9ASN 366
C
 LEU 9ASN 366
D
 LEU 9ASN 366
E
 SER 81ALA 147
F
 SER 81ALA 147
G
 SER 81ALA 147
H
 SER 81ALA 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 9YDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 51Right-handed alpha
Helix 2
AA2
A
55 73Right-handed alpha
Helix 3
AA3
A
75 92Right-handed alpha
Helix 4
AA4
A
95 100Right-handed alpha
Helix 5
AA5
A
101 116Right-handed alpha
Helix 6
AA6
A
149 155Right-handed alpha
Helix 7
AA7
A
156 160Right-handed 310
Helix 8
AA8
A
161 170Right-handed alpha
Helix 9
AA9
A
176 186Right-handed alpha
Helix 10
AB1
A
191 203Right-handed alpha
Helix 11
AB2
A
203 215Right-handed alpha
Helix 12
AB3
A
217 227Right-handed alpha
Helix 13
AB4
A
236 244Right-handed alpha
Helix 14
AB5
A
244 249Right-handed alpha
Helix 15
AB6
A
271 289Right-handed alpha
Helix 16
AB7
A
292 332Right-handed alpha
Helix 17
AB8
A
334 366Right-handed alpha
Helix 18
AB9
B
10 51Right-handed alpha
Helix 19
AC1
B
55 92Right-handed alpha
Helix 20
AC2
B
101 115Right-handed alpha
Helix 21
AC3
B
146 155Right-handed alpha
Helix 22
AC4
B
156 161Right-handed 310
Helix 23
AC5
B
162 172Right-handed alpha
Helix 24
AC6
B
176 187Right-handed alpha
Helix 25
AC7
B
191 203Right-handed alpha
Helix 26
AC8
B
205 216Right-handed alpha
Helix 27
AC9
B
219 227Right-handed alpha
Helix 28
AD1
B
236 244Right-handed alpha
Helix 29
AD2
B
244 249Right-handed alpha
Helix 30
AD3
B
271 289Right-handed alpha
Helix 31
AD4
B
292 332Right-handed alpha
Helix 32
AD5
B
337 366Right-handed alpha
Helix 33
AD6
C
10 50Right-handed alpha
Helix 34
AD7
C
51 54Right-handed 310
Helix 35
AD8
C
55 91Right-handed alpha
Helix 36
AD9
C
95 100Right-handed alpha
Helix 37
AE1
C
101 116Right-handed alpha
Helix 38
AE2
C
149 155Right-handed alpha
Helix 39
AE3
C
156 160Right-handed 310
Helix 40
AE4
C
161 170Right-handed alpha
Helix 41
AE5
C
176 187Right-handed alpha
Helix 42
AE6
C
191 203Right-handed alpha
Helix 43
AE7
C
205 219Right-handed alpha
Helix 44
AE8
C
221 227Right-handed alpha
Helix 45
AE9
C
236 244Right-handed alpha
Helix 46
AF1
C
244 249Right-handed alpha
Helix 47
AF2
C
260 270Right-handed alpha
Helix 48
AF3
C
274 289Right-handed alpha
Helix 49
AF4
C
292 332Right-handed alpha
Helix 50
AF5
C
334 366Right-handed alpha
Helix 51
AF6
D
10 33Right-handed alpha
Helix 52
AF7
D
33 51Right-handed alpha
Helix 53
AF8
D
54 73Right-handed alpha
Helix 54
AF9
D
76 92Right-handed alpha
Helix 55
AG1
D
101 115Right-handed alpha
Helix 56
AG2
D
146 155Right-handed alpha
Helix 57
AG3
D
156 160Right-handed 310
Helix 58
AG4
D
161 171Right-handed alpha
Helix 59
AG5
D
176 184Right-handed alpha
Helix 60
AG6
D
191 203Right-handed alpha
Helix 61
AG7
D
205 215Right-handed alpha
Helix 62
AG8
D
217 227Right-handed alpha
Helix 63
AG9
D
236 244Right-handed alpha
Helix 64
AH1
D
244 249Right-handed alpha
Helix 65
AH2
D
260 265Right-handed alpha
Helix 66
AH3
D
268 289Right-handed alpha
Helix 67
AH4
D
292 332Right-handed alpha
Helix 68
AH5
D
335 366Right-handed alpha
Helix 69
AH6
E
84 92Right-handed alpha
Helix 70
AH7
E
101 112Right-handed alpha
Helix 71
AH8
E
117 129Right-handed alpha
Helix 72
AH9
E
142 147Right-handed alpha
Helix 73
AI1
F
84 92Right-handed alpha
Helix 74
AI2
F
101 112Right-handed alpha
Helix 75
AI3
F
117 129Right-handed alpha
Helix 76
AI4
F
142 147Right-handed alpha
Helix 77
AI5
G
84 92Right-handed alpha
Helix 78
AI6
G
101 112Right-handed alpha
Helix 79
AI7
G
117 129Right-handed alpha
Helix 80
AI8
G
142 147Right-handed alpha
Helix 81
AI9
H
84 92Right-handed alpha
Helix 82
AJ1
H
101 112Right-handed alpha
Helix 83
AJ2
H
117 129Right-handed alpha
Helix 84
AJ3
H
142 147Right-handed alpha
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There are no sheets in PDB entry 9YDZ
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