Analysis of interatomic Contacts of Structural Units in PDB entry:
9YE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YE9 entry

There are 3 chains in PDB entry 9YE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4MET 147
B
 GLU 207GLY 279
C
 PRO 209GLU 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9YE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-4 16Right-handed alpha
Helix 2
AA2
A
86 90Right-handed 310
Helix 3
AA3
A
98 112Right-handed alpha
Helix 4
AA4
A
120 130Right-handed alpha
Helix 5
AA5
A
130 146Right-handed alpha
Helix 6
AA6
B
209 213Right-handed 310
Helix 7
AA7
B
235 245Right-handed alpha
Helix 8
AA8
B
257 261Right-handed 310
Helix 9
AA9
B
264 276Right-handed alpha
Helix 10
AB1
C
209 213Right-handed 310
Helix 11
AB2
C
235 245Right-handed alpha
Helix 12
AB3
C
257 261Right-handed 310
Helix 13
AB4
C
264 276Right-handed alpha
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There are 3 sheets in PDB entry 9YE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
66 69anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
224 226anti-parallel
Strand 3
B
262 263anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 234first strand
Strand 2
C
224 226anti-parallel
Strand 3
C
262 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il