Analysis of interatomic Contacts of Structural Units in PDB entry:
9YEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YEJ entry

There are 4 chains in PDB entry 9YEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20ASP 718
B
 GLU 390PRO 588
C
 THR 20ASP 718
D
 GLU 390PRO 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 9YEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
58 81Right-handed alpha
Helix 3
AA3
A
90 97Right-handed alpha
Helix 4
AA4
A
109 129Right-handed alpha
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
157 172Right-handed alpha
Helix 7
AA7
A
173 175Right-handed 310
Helix 8
AA8
A
176 193Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
220 231Right-handed alpha
Helix 12
AB3
A
233 249Right-handed alpha
Helix 13
AB4
A
278 282Right-handed 310
Helix 14
AB5
A
293 300Right-handed alpha
Helix 15
AB6
A
305 317Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
365 375Right-handed alpha
Helix 18
AB9
A
376 383Right-handed alpha
Helix 19
AC1
A
389 393Right-handed 310
Helix 20
AC2
A
400 412Right-handed alpha
Helix 21
AC3
A
414 421Right-handed alpha
Helix 22
AC4
A
433 444Right-handed alpha
Helix 23
AC5
A
449 465Right-handed alpha
Helix 24
AC6
A
473 482Right-handed alpha
Helix 25
AC7
A
499 503Right-handed 310
Helix 26
AC8
A
505 509Right-handed 310
Helix 27
AC9
A
520 533Right-handed alpha
Helix 28
AD1
A
538 542Right-handed 310
Helix 29
AD2
A
548 559Right-handed alpha
Helix 30
AD3
A
565 572Right-handed alpha
Helix 31
AD4
A
581 588Right-handed alpha
Helix 32
AD5
A
588 599Right-handed alpha
Helix 33
AD6
A
626 631Right-handed alpha
Helix 34
AD7
A
636 659Right-handed alpha
Helix 35
AD8
A
666 668Right-handed 310
Helix 36
AD9
A
696 707Right-handed alpha
Helix 37
AE1
B
394 398Right-handed 310
Helix 38
AE2
B
418 424Right-handed alpha
Helix 39
AE3
B
438 442Right-handed 310
Helix 40
AE4
B
461 465Right-handed 310
Helix 41
AE5
B
470 476Right-handed alpha
Helix 42
AE6
B
534 538Right-handed 310
Helix 43
AE7
C
21 53Right-handed alpha
Helix 44
AE8
C
58 81Right-handed alpha
Helix 45
AE9
C
90 97Right-handed alpha
Helix 46
AF1
C
109 129Right-handed alpha
Helix 47
AF2
C
147 155Right-handed alpha
Helix 48
AF3
C
157 172Right-handed alpha
Helix 49
AF4
C
173 175Right-handed 310
Helix 50
AF5
C
176 193Right-handed alpha
Helix 51
AF6
C
198 205Right-handed alpha
Helix 52
AF7
C
206 208Right-handed 310
Helix 53
AF8
C
220 231Right-handed alpha
Helix 54
AF9
C
233 249Right-handed alpha
Helix 55
AG1
C
278 282Right-handed 310
Helix 56
AG2
C
293 300Right-handed alpha
Helix 57
AG3
C
305 317Right-handed alpha
Helix 58
AG4
C
324 331Right-handed alpha
Helix 59
AG5
C
365 375Right-handed alpha
Helix 60
AG6
C
376 383Right-handed alpha
Helix 61
AG7
C
389 393Right-handed 310
Helix 62
AG8
C
400 412Right-handed alpha
Helix 63
AG9
C
414 421Right-handed alpha
Helix 64
AH1
C
433 444Right-handed alpha
Helix 65
AH2
C
449 465Right-handed alpha
Helix 66
AH3
C
473 482Right-handed alpha
Helix 67
AH4
C
499 503Right-handed 310
Helix 68
AH5
C
505 509Right-handed 310
Helix 69
AH6
C
520 533Right-handed alpha
Helix 70
AH7
C
538 542Right-handed 310
Helix 71
AH8
C
548 559Right-handed alpha
Helix 72
AH9
C
565 572Right-handed alpha
Helix 73
AI1
C
581 588Right-handed alpha
Helix 74
AI2
C
588 599Right-handed alpha
Helix 75
AI3
C
626 631Right-handed alpha
Helix 76
AI4
C
636 659Right-handed alpha
Helix 77
AI5
C
666 668Right-handed 310
Helix 78
AI6
C
696 707Right-handed alpha
Helix 79
AI7
D
394 398Right-handed 310
Helix 80
AI8
D
418 424Right-handed alpha
Helix 81
AI9
D
438 442Right-handed 310
Helix 82
AJ1
D
461 465Right-handed 310
Helix 83
AJ2
D
470 475Right-handed alpha
Helix 84
AJ3
D
534 538Right-handed 310
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There are 11 sheets in PDB entry 9YEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 621first strand
Strand 2
A
680 685anti-parallel
Strand 3
A
670 672anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 412first strand
Strand 2
B
449 454anti-parallel
Strand 3
B
570 577anti-parallel
Strand 4
B
485 491anti-parallel
Strand 5
B
430 434anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 521first strand
Strand 2
B
504 515anti-parallel
Strand 3
B
555 564anti-parallel
Strand 4
B
545 550anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 133first strand
Strand 2
C
141 143anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
487 488parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 350first strand
Strand 2
C
356 359anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
618 621first strand
Strand 2
C
680 685anti-parallel
Strand 3
C
670 676anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
408 412first strand
Strand 2
D
449 454anti-parallel
Strand 3
D
570 577anti-parallel
Strand 4
D
485 491anti-parallel
Strand 5
D
430 434anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
518 521first strand
Strand 2
D
504 515anti-parallel
Strand 3
D
555 564anti-parallel
Strand 4
D
545 550anti-parallel
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