Analysis of interatomic Contacts of Structural Units in PDB entry:
9YF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YF0 entry

There are 5 chains in PDB entry 9YF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLY 437
C	SER 1	GLN 436
E	SER 1	PRO 478
D	LEU 1	ILE 496
B	LYS 1	PRO 473

There are 57 helices in PDB entry 9YF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	68	73	Right-handed 310
Helix 3	AA3	A	211	218	Right-handed alpha
Helix 4	AA4	A	218	232	Right-handed alpha
Helix 5	AA5	A	236	240	Right-handed 310
Helix 6	AA6	A	241	263	Right-handed alpha
Helix 7	AA7	A	272	300	Right-handed alpha
Helix 8	AA8	A	309	316	Right-handed alpha
Helix 9	AA9	A	319	323	Right-handed 310
Helix 10	AB1	A	375	437	Right-handed alpha
Helix 11	AB2	C	2	12	Right-handed alpha
Helix 12	AB3	C	83	85	Right-handed 310
Helix 13	AB4	C	131	135	Right-handed 310
Helix 14	AB5	C	211	218	Right-handed alpha
Helix 15	AB6	C	218	229	Right-handed alpha
Helix 16	AB7	C	230	234	Right-handed 310
Helix 17	AB8	C	241	264	Right-handed alpha
Helix 18	AB9	C	272	300	Right-handed alpha
Helix 19	AC1	C	309	316	Right-handed alpha
Helix 20	AC2	C	319	323	Right-handed 310
Helix 21	AC3	C	371	435	Right-handed alpha
Helix 22	AC4	E	2	12	Right-handed alpha
Helix 23	AC5	E	63	66	Right-handed 310
Helix 24	AC6	E	68	72	Right-handed 310
Helix 25	AC7	E	131	135	Right-handed 310
Helix 26	AC8	E	222	229	Right-handed alpha
Helix 27	AC9	E	229	246	Right-handed alpha
Helix 28	AD1	E	247	251	Right-handed 310
Helix 29	AD2	E	252	275	Right-handed alpha
Helix 30	AD3	E	283	311	Right-handed alpha
Helix 31	AD4	E	320	328	Right-handed alpha
Helix 32	AD5	E	330	335	Right-handed alpha
Helix 33	AD6	E	413	469	Right-handed alpha
Helix 34	AD7	D	2	13	Right-handed alpha
Helix 35	AD8	D	70	75	Right-handed 310
Helix 36	AD9	D	83	87	Right-handed 310
Helix 37	AE1	D	225	232	Right-handed alpha
Helix 38	AE2	D	233	243	Right-handed alpha
Helix 39	AE3	D	244	246	Right-handed 310
Helix 40	AE4	D	255	278	Right-handed alpha
Helix 41	AE5	D	286	314	Right-handed alpha
Helix 42	AE6	D	323	330	Right-handed alpha
Helix 43	AE7	D	333	338	Right-handed alpha
Helix 44	AE8	D	416	473	Right-handed alpha
Helix 45	AE9	B	2	13	Right-handed alpha
Helix 46	AF1	B	68	73	Right-handed 310
Helix 47	AF2	B	111	113	Right-handed 310
Helix 48	AF3	B	131	135	Right-handed 310
Helix 49	AF4	B	220	227	Right-handed alpha
Helix 50	AF5	B	227	244	Right-handed alpha
Helix 51	AF6	B	251	272	Right-handed alpha
Helix 52	AF7	B	282	310	Right-handed alpha
Helix 53	AF8	B	319	324	Right-handed alpha
Helix 54	AF9	B	324	329	Right-handed alpha
Helix 55	AG1	B	329	334	Right-handed alpha
Helix 56	AG2	B	403	453	Right-handed alpha
Helix 57	AG3	B	454	459	Right-handed alpha

There are 21 sheets in PDB entry 9YF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	57	61	anti-parallel
Strand 5	A	29	34	anti-parallel
Strand 6	A	156	160	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	44	first strand
Strand 2	A	49	54	anti-parallel
Strand 3	A	122	127	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	193	209	anti-parallel
Strand 4	A	176	190	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	121	127	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	29	44	anti-parallel
Strand 6	C	156	160	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	193	209	anti-parallel
Strand 4	C	176	190	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	158	160	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	44	first strand
Strand 2	E	49	56	anti-parallel
Strand 3	E	121	126	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	61	first strand
Strand 2	E	115	118	anti-parallel
Strand 3	E	109	111	anti-parallel
Strand 4	E	77	78	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	145	148	anti-parallel
Strand 3	E	211	213	anti-parallel
Strand 4	E	193	195	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	142	first strand
Strand 2	E	216	220	anti-parallel
Strand 3	E	185	189	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	129	first strand
Strand 2	D	51	59	anti-parallel
Strand 3	D	31	46	anti-parallel
Strand 4	D	158	162	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	68	first strand
Strand 2	D	115	120	anti-parallel
Strand 3	D	110	112	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	147	150	anti-parallel
Strand 3	D	213	216	anti-parallel
Strand 4	D	198	201	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	D	219	223	anti-parallel
Strand 3	D	190	194	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	171	173	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	49	61	anti-parallel
Strand 3	B	121	127	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	49	61	anti-parallel
Strand 3	B	29	44	anti-parallel
Strand 4	B	156	162	parallel
Strand 5	B	168	169	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	108	109	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	143	148	anti-parallel
Strand 3	B	207	213	anti-parallel
Strand 4	B	192	197	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	215	218	anti-parallel
Strand 3	B	185	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YF0