Analysis of interatomic Contacts of Structural Units in PDB entry:
9YFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YFV entry

There are 4 chains in PDB entry 9YFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 242ASN 574
D
 ARG 242ASN 574
A
 ARG 242ASN 574
C
 ARG 242ASN 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9YFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
252 264Right-handed alpha
Helix 2
AA2
B
278 288Right-handed alpha
Helix 3
AA3
B
300 308Right-handed alpha
Helix 4
AA4
B
321 336Right-handed alpha
Helix 5
AA5
B
347 349Right-handed 310
Helix 6
AA6
B
350 355Right-handed alpha
Helix 7
AA7
B
356 358Right-handed 310
Helix 8
AA8
B
364 379Right-handed alpha
Helix 9
AA9
B
383 392Right-handed alpha
Helix 10
AB1
B
433 445Right-handed alpha
Helix 11
AB2
B
457 469Right-handed alpha
Helix 12
AB3
B
481 488Right-handed alpha
Helix 13
AB4
B
489 491Right-handed 310
Helix 14
AB5
B
502 517Right-handed alpha
Helix 15
AB6
B
528 530Right-handed 310
Helix 16
AB7
B
531 536Right-handed alpha
Helix 17
AB8
B
537 539Right-handed 310
Helix 18
AB9
B
545 559Right-handed alpha
Helix 19
AC1
B
564 573Right-handed alpha
Helix 20
AC2
D
252 263Right-handed alpha
Helix 21
AC3
D
276 286Right-handed alpha
Helix 22
AC4
D
300 308Right-handed alpha
Helix 23
AC5
D
321 336Right-handed alpha
Helix 24
AC6
D
348 352Right-handed 310
Helix 25
AC7
D
353 358Right-handed 310
Helix 26
AC8
D
364 377Right-handed alpha
Helix 27
AC9
D
383 393Right-handed alpha
Helix 28
AD1
D
433 446Right-handed alpha
Helix 29
AD2
D
457 469Right-handed alpha
Helix 30
AD3
D
481 488Right-handed alpha
Helix 31
AD4
D
502 517Right-handed alpha
Helix 32
AD5
D
545 559Right-handed alpha
Helix 33
AD6
D
566 573Right-handed alpha
Helix 34
AD7
A
252 264Right-handed alpha
Helix 35
AD8
A
278 288Right-handed alpha
Helix 36
AD9
A
300 308Right-handed alpha
Helix 37
AE1
A
321 336Right-handed alpha
Helix 38
AE2
A
347 349Right-handed 310
Helix 39
AE3
A
350 355Right-handed alpha
Helix 40
AE4
A
364 379Right-handed alpha
Helix 41
AE5
A
383 392Right-handed alpha
Helix 42
AE6
A
433 445Right-handed alpha
Helix 43
AE7
A
457 469Right-handed alpha
Helix 44
AE8
A
481 488Right-handed alpha
Helix 45
AE9
A
489 491Right-handed 310
Helix 46
AF1
A
502 517Right-handed alpha
Helix 47
AF2
A
528 530Right-handed 310
Helix 48
AF3
A
531 536Right-handed alpha
Helix 49
AF4
A
537 539Right-handed 310
Helix 50
AF5
A
545 559Right-handed alpha
Helix 51
AF6
A
564 573Right-handed alpha
Helix 52
AF7
C
252 263Right-handed alpha
Helix 53
AF8
C
276 286Right-handed alpha
Helix 54
AF9
C
300 308Right-handed alpha
Helix 55
AG1
C
321 336Right-handed alpha
Helix 56
AG2
C
348 352Right-handed 310
Helix 57
AG3
C
353 358Right-handed 310
Helix 58
AG4
C
364 378Right-handed alpha
Helix 59
AG5
C
383 393Right-handed alpha
Helix 60
AG6
C
433 446Right-handed alpha
Helix 61
AG7
C
457 469Right-handed alpha
Helix 62
AG8
C
481 488Right-handed alpha
Helix 63
AG9
C
502 517Right-handed alpha
Helix 64
AH1
C
545 559Right-handed alpha
Helix 65
AH2
C
566 573Right-handed alpha
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There are 8 sheets in PDB entry 9YFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
271 273parallel
Strand 3
B
247 249parallel
Strand 4
B
315 317parallel
Strand 5
B
341 344parallel
Strand 6
B
361 363parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 476first strand
Strand 2
B
450 454parallel
Strand 3
B
426 429parallel
Strand 4
B
493 498parallel
Strand 5
B
521 525parallel
Strand 6
B
542 544parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
293 295first strand
Strand 2
D
269 273parallel
Strand 3
D
246 249parallel
Strand 4
D
314 317parallel
Strand 5
D
341 344parallel
Strand 6
D
361 363parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
473 476first strand
Strand 2
D
450 454parallel
Strand 3
D
426 430parallel
Strand 4
D
493 498parallel
Strand 5
D
522 525parallel
Strand 6
D
542 544parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
271 273parallel
Strand 3
A
247 249parallel
Strand 4
A
315 317parallel
Strand 5
A
341 344parallel
Strand 6
A
361 363parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
450 454parallel
Strand 3
A
426 429parallel
Strand 4
A
493 498parallel
Strand 5
A
521 525parallel
Strand 6
A
542 544parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
293 295first strand
Strand 2
C
269 273parallel
Strand 3
C
246 249parallel
Strand 4
C
314 317parallel
Strand 5
C
341 344parallel
Strand 6
C
361 363parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
473 476first strand
Strand 2
C
450 454parallel
Strand 3
C
426 430parallel
Strand 4
C
493 498parallel
Strand 5
C
522 525parallel
Strand 6
C
542 544parallel
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