Analysis of interatomic Contacts of Structural Units in PDB entry:
9YFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YFY entry

There are 2 chains in PDB entry 9YFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 352
B
 MET 1ASN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9YFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 38Right-handed alpha
Helix 2
AA2
A
55 62Right-handed alpha
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
81 92Right-handed alpha
Helix 5
AA5
A
104 114Right-handed alpha
Helix 6
AA6
A
140 149Right-handed alpha
Helix 7
AA7
A
154 171Right-handed alpha
Helix 8
AA8
A
193 195Right-handed 310
Helix 9
AA9
A
204 207Right-handed 310
Helix 10
AB1
A
208 219Right-handed alpha
Helix 11
AB2
A
234 242Right-handed alpha
Helix 12
AB3
A
253 260Right-handed alpha
Helix 13
AB4
A
271 280Right-handed alpha
Helix 14
AB5
A
306 309Right-handed 310
Helix 15
AB6
A
310 319Right-handed alpha
Helix 16
AB7
A
337 344Right-handed alpha
Helix 17
AB8
A
346 350Right-handed 310
Helix 18
AB9
B
14 38Right-handed alpha
Helix 19
AC1
B
55 63Right-handed alpha
Helix 20
AC2
B
76 80Right-handed 310
Helix 21
AC3
B
81 92Right-handed alpha
Helix 22
AC4
B
104 114Right-handed alpha
Helix 23
AC5
B
140 149Right-handed alpha
Helix 24
AC6
B
154 171Right-handed alpha
Helix 25
AC7
B
193 195Right-handed 310
Helix 26
AC8
B
204 207Right-handed 310
Helix 27
AC9
B
208 219Right-handed alpha
Helix 28
AD1
B
234 242Right-handed alpha
Helix 29
AD2
B
253 259Right-handed alpha
Helix 30
AD3
B
271 279Right-handed alpha
Helix 31
AD4
B
306 309Right-handed 310
Helix 32
AD5
B
310 319Right-handed alpha
Helix 33
AD6
B
337 344Right-handed alpha
Helix 34
AD7
B
346 350Right-handed 310
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There are 6 sheets in PDB entry 9YFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
3 7parallel
Strand 3
A
96 101parallel
Strand 4
A
117 123parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
302 304anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
221 225parallel
Strand 3
A
183 187parallel
Strand 4
A
263 268parallel
Strand 5
A
283 286parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
201 202anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
3 7parallel
Strand 3
B
96 101parallel
Strand 4
B
117 123parallel
Strand 5
B
134 138anti-parallel
Strand 6
B
302 304anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
221 225parallel
Strand 3
B
183 187parallel
Strand 4
B
263 268parallel
Strand 5
B
283 286parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
201 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il