Analysis of interatomic Contacts of Structural Units in PDB entry:
9YGJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YGJ entry

There are 4 chains in PDB entry 9YGJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 35	ASN 2157
B	TYR 740	PHE 1166
C	GLU 98	PRO 1156
D	ASN 108	LYS 529

There are155 helices in PDB entry 9YGJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	827	847	Right-handed alpha
Helix 2	AA2	A	925	931	Right-handed alpha
Helix 3	AA3	A	933	935	Right-handed 310
Helix 4	AA4	A	936	947	Right-handed alpha
Helix 5	AA5	A	950	964	Right-handed alpha
Helix 6	AA6	A	972	997	Right-handed alpha
Helix 7	AA7	A	1008	1021	Right-handed alpha
Helix 8	AA8	A	1033	1039	Right-handed alpha
Helix 9	AA9	A	1047	1067	Right-handed alpha
Helix 10	AB1	A	1072	1086	Right-handed alpha
Helix 11	AB2	A	1088	1095	Right-handed alpha
Helix 12	AB3	A	1095	1100	Right-handed alpha
Helix 13	AB4	A	1107	1113	Right-handed alpha
Helix 14	AB5	A	1116	1132	Right-handed alpha
Helix 15	AB6	A	1132	1138	Right-handed alpha
Helix 16	AB7	A	1146	1154	Right-handed alpha
Helix 17	AB8	A	1155	1166	Right-handed alpha
Helix 18	AB9	A	1184	1188	Right-handed 310
Helix 19	AC1	A	1197	1221	Right-handed alpha
Helix 20	AC2	A	1221	1228	Right-handed alpha
Helix 21	AC3	A	1238	1251	Right-handed alpha
Helix 22	AC4	A	1278	1305	Right-handed alpha
Helix 23	AC5	A	1306	1308	Right-handed 310
Helix 24	AC6	A	1311	1319	Right-handed alpha
Helix 25	AC7	A	1324	1333	Right-handed 310
Helix 26	AC8	A	1345	1349	Right-handed 310
Helix 27	AC9	A	1357	1367	Right-handed alpha
Helix 28	AD1	A	1414	1431	Right-handed alpha
Helix 29	AD2	A	1431	1437	Right-handed alpha
Helix 30	AD3	A	1438	1451	Right-handed alpha
Helix 31	AD4	A	1453	1460	Right-handed alpha
Helix 32	AD5	A	1462	1471	Right-handed alpha
Helix 33	AD6	A	1475	1488	Right-handed alpha
Helix 34	AD7	A	1492	1504	Right-handed alpha
Helix 35	AD8	A	1506	1513	Right-handed alpha
Helix 36	AD9	A	1520	1532	Right-handed alpha
Helix 37	AE1	A	1533	1535	Right-handed 310
Helix 38	AE2	A	1536	1550	Right-handed alpha
Helix 39	AE3	A	1553	1557	Right-handed 310
Helix 40	AE4	A	1558	1563	Right-handed alpha
Helix 41	AE5	A	1569	1575	Right-handed alpha
Helix 42	AE6	A	1579	1586	Right-handed 310
Helix 43	AE7	A	1594	1602	Right-handed alpha
Helix 44	AE8	A	1605	1622	Right-handed alpha
Helix 45	AE9	A	1622	1648	Right-handed alpha
Helix 46	AF1	A	1658	1684	Right-handed alpha
Helix 47	AF2	A	1685	1687	Right-handed 310
Helix 48	AF3	A	1688	1708	Right-handed alpha
Helix 49	AF4	A	1710	1715	Right-handed alpha
Helix 50	AF5	A	1716	1731	Right-handed alpha
Helix 51	AF6	A	1749	1766	Right-handed alpha
Helix 52	AF7	A	1784	1801	Right-handed alpha
Helix 53	AF8	A	1805	1809	Right-handed 310
Helix 54	AF9	A	1810	1827	Right-handed alpha
Helix 55	AG1	A	1828	1833	Right-handed alpha
Helix 56	AG2	A	1849	1853	Right-handed 310
Helix 57	AG3	A	1854	1888	Right-handed alpha
Helix 58	AG4	A	1892	1900	Right-handed alpha
Helix 59	AG5	A	1901	1906	Right-handed alpha
Helix 60	AG6	A	1912	1915	Right-handed 310
Helix 61	AG7	A	1916	1923	Right-handed alpha
Helix 62	AG8	A	1924	1932	Right-handed alpha
Helix 63	AG9	A	1935	1945	Right-handed alpha
Helix 64	AH1	A	1948	1967	Right-handed alpha
Helix 65	AH2	A	1969	1979	Right-handed alpha
Helix 66	AH3	A	1979	2030	Right-handed alpha
Helix 67	AH4	A	2055	2059	Right-handed 310
Helix 68	AH5	A	2064	2070	Right-handed alpha
Helix 69	AH6	A	2071	2073	Right-handed 310
Helix 70	AH7	A	2085	2099	Right-handed alpha
Helix 71	AH8	A	2099	2124	Right-handed alpha
Helix 72	AH9	A	2125	2152	Right-handed alpha
Helix 73	AI1	A	2153	2156	Right-handed 310
Helix 74	AI2	B	751	756	Right-handed 310
Helix 75	AI3	B	763	778	Right-handed alpha
Helix 76	AI4	B	779	785	Right-handed alpha
Helix 77	AI5	B	786	788	Right-handed 310
Helix 78	AI6	B	792	803	Right-handed alpha
Helix 79	AI7	B	806	813	Right-handed alpha
Helix 80	AI8	B	818	841	Right-handed alpha
Helix 81	AI9	B	841	847	Right-handed alpha
Helix 82	AJ1	B	851	856	Right-handed 310
Helix 83	AJ2	B	858	871	Right-handed alpha
Helix 84	AJ3	B	898	914	Right-handed alpha
Helix 85	AJ4	B	918	922	Right-handed 310
Helix 86	AJ5	B	924	927	Right-handed 310
Helix 87	AJ6	B	928	952	Right-handed alpha
Helix 88	AJ7	B	961	971	Right-handed alpha
Helix 89	AJ8	B	972	975	Right-handed 310
Helix 90	AJ9	B	979	991	Right-handed alpha
Helix 91	AK1	B	992	1009	Right-handed alpha
Helix 92	AK2	B	1024	1034	Right-handed alpha
Helix 93	AK3	B	1040	1059	Right-handed alpha
Helix 94	AK4	B	1062	1083	Right-handed alpha
Helix 95	AK5	B	1094	1102	Right-handed alpha
Helix 96	AK6	B	1105	1115	Right-handed alpha
Helix 97	AK7	B	1124	1131	Right-handed alpha
Helix 98	AK8	B	1135	1147	Right-handed alpha
Helix 99	AK9	B	1148	1151	Right-handed 310
Helix 100	AL1	B	1152	1165	Right-handed alpha
Helix 101	AL2	C	100	129	Right-handed alpha
Helix 102	AL3	C	138	161	Right-handed alpha
Helix 103	AL4	C	170	177	Right-handed alpha
Helix 104	AL5	C	178	197	Right-handed alpha
Helix 105	AL6	C	213	242	Right-handed alpha
Helix 106	AL7	C	253	258	Right-handed alpha
Helix 107	AL8	C	263	279	Right-handed alpha
Helix 108	AL9	C	281	291	Right-handed 310
Helix 109	AM1	C	292	303	Right-handed alpha
Helix 110	AM2	C	309	328	Right-handed alpha
Helix 111	AM3	C	338	347	Right-handed alpha
Helix 112	AM4	C	363	368	Right-handed alpha
Helix 113	AM5	C	369	379	Right-handed alpha
Helix 114	AM6	C	379	402	Right-handed alpha
Helix 115	AM7	C	403	410	Right-handed alpha
Helix 116	AM8	C	414	418	Right-handed 310
Helix 117	AM9	C	423	430	Right-handed alpha
Helix 118	AN1	C	445	450	Right-handed 310
Helix 119	AN2	C	451	455	Right-handed 310
Helix 120	AN3	C	466	483	Right-handed alpha
Helix 121	AN4	C	490	510	Right-handed alpha
Helix 122	AN5	C	513	517	Right-handed 310
Helix 123	AN6	C	528	538	Right-handed alpha
Helix 124	AN7	C	556	573	Right-handed alpha
Helix 125	AN8	C	580	584	Right-handed 310
Helix 126	AN9	C	603	611	Right-handed alpha
Helix 127	AO1	C	619	640	Right-handed alpha
Helix 128	AO2	C	647	663	Right-handed alpha
Helix 129	AO3	C	677	689	Right-handed alpha
Helix 130	AO4	C	693	706	Right-handed alpha
Helix 131	AO5	C	745	760	Right-handed alpha
Helix 132	AO6	C	764	785	Right-handed alpha
Helix 133	AO7	C	798	803	Right-handed alpha
Helix 134	AO8	C	804	829	Right-handed alpha
Helix 135	AO9	C	832	834	Right-handed 310
Helix 136	AP1	C	835	845	Right-handed alpha
Helix 137	AP2	C	873	892	Right-handed alpha
Helix 138	AP3	C	971	979	Right-handed alpha
Helix 139	AP4	C	1006	1013	Right-handed alpha
Helix 140	AP5	C	1029	1035	Right-handed alpha
Helix 141	AP6	C	1056	1061	Right-handed alpha
Helix 142	AP7	C	1080	1085	Right-handed alpha
Helix 143	AP8	C	1090	1097	Right-handed 310
Helix 144	AP9	C	1122	1126	Right-handed 310
Helix 145	AQ1	D	110	116	Right-handed alpha
Helix 146	AQ2	D	118	123	Right-handed alpha
Helix 147	AQ3	D	195	202	Right-handed alpha
Helix 148	AQ4	D	207	211	Right-handed 310
Helix 149	AQ5	D	212	223	Right-handed alpha
Helix 150	AQ6	D	297	302	Right-handed alpha
Helix 151	AQ7	D	333	344	Right-handed alpha
Helix 152	AQ8	D	358	366	Right-handed alpha
Helix 153	AQ9	D	371	380	Right-handed alpha
Helix 154	AR1	D	381	385	Right-handed 310
Helix 155	AR2	D	442	459	Right-handed alpha

There are 21 sheets in PDB entry 9YGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	48	53	anti-parallel
Strand 3	C	951	955	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1168	1170	first strand
Strand 2	A	1191	1193	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1564	1568	first strand
Strand 2	A	1777	1783	anti-parallel
Strand 3	A	1737	1741	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	A	2047	2050	anti-parallel
Strand 3	A	2037	2040	anti-parallel
Strand 4	D	224	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	761	first strand
Strand 2	B	1091	1093	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	881	883	first strand
Strand 2	B	892	894	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1013	1015	first strand
Strand 2	B	1018	1020	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	714	first strand
Strand 2	C	741	743	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	718	first strand
Strand 2	C	850	853	anti-parallel
Strand 3	C	862	865	anti-parallel
Strand 4	C	922	925	parallel
Strand 5	C	940	942	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	930	931	first strand
Strand 2	C	936	937	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	968	970	first strand
Strand 2	C	961	963	anti-parallel
Strand 3	C	1026	1028	parallel
Strand 4	C	1019	1021	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	984	985	first strand
Strand 2	C	994	997	anti-parallel
Strand 3	C	1003	1005	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1050	1053	first strand
Strand 2	C	1042	1045	anti-parallel
Strand 3	C	1073	1075	parallel
Strand 4	C	1066	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1113	1117	first strand
Strand 2	C	1103	1107	anti-parallel
Strand 3	C	1148	1153	parallel
Strand 4	C	1138	1143	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	140	144	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	287	290	anti-parallel
Strand 3	D	238	241	anti-parallel
Strand 4	D	246	249	anti-parallel
Strand 5	D	193	194	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	158	first strand
Strand 2	D	276	280	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	437	438	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	313	first strand
Strand 2	D	418	421	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	408	412	anti-parallel
Strand 3	D	399	403	anti-parallel
Strand 4	D	425	429	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	516	first strand
Strand 2	D	522	524	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YGJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YGJ