Analysis of interatomic Contacts of Structural Units in PDB entry:
9YGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YGL entry

There are 8 chains in PDB entry 9YGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	HIS 245	ILE 398
F	HIS 245	ILE 398
H	HIS 245	ILE 398
A	HIS 245	ILE 398
B	HIS 245	ILE 398
D	HIS 245	ILE 398
C	HIS 245	ILE 398
G	HIS 245	ILE 398

There are 64 helices in PDB entry 9YGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	252	265	Right-handed alpha
Helix 2	AA2	E	276	288	Right-handed alpha
Helix 3	AA3	E	300	308	Right-handed alpha
Helix 4	AA4	E	321	336	Right-handed alpha
Helix 5	AA5	E	347	349	Right-handed 310
Helix 6	AA6	E	350	358	Right-handed alpha
Helix 7	AA7	E	364	378	Right-handed alpha
Helix 8	AA8	E	383	394	Right-handed alpha
Helix 9	AA9	F	252	264	Right-handed alpha
Helix 10	AB1	F	276	288	Right-handed alpha
Helix 11	AB2	F	300	308	Right-handed alpha
Helix 12	AB3	F	321	336	Right-handed alpha
Helix 13	AB4	F	347	349	Right-handed 310
Helix 14	AB5	F	350	358	Right-handed alpha
Helix 15	AB6	F	364	378	Right-handed alpha
Helix 16	AB7	F	383	395	Right-handed alpha
Helix 17	AB8	H	252	264	Right-handed alpha
Helix 18	AB9	H	276	288	Right-handed alpha
Helix 19	AC1	H	300	308	Right-handed alpha
Helix 20	AC2	H	321	336	Right-handed alpha
Helix 21	AC3	H	347	349	Right-handed 310
Helix 22	AC4	H	350	358	Right-handed alpha
Helix 23	AC5	H	364	378	Right-handed alpha
Helix 24	AC6	H	383	395	Right-handed alpha
Helix 25	AC7	A	252	265	Right-handed alpha
Helix 26	AC8	A	276	288	Right-handed alpha
Helix 27	AC9	A	300	308	Right-handed alpha
Helix 28	AD1	A	321	336	Right-handed alpha
Helix 29	AD2	A	347	349	Right-handed 310
Helix 30	AD3	A	350	358	Right-handed alpha
Helix 31	AD4	A	364	378	Right-handed alpha
Helix 32	AD5	A	383	394	Right-handed alpha
Helix 33	AD6	B	252	264	Right-handed alpha
Helix 34	AD7	B	276	288	Right-handed alpha
Helix 35	AD8	B	300	308	Right-handed alpha
Helix 36	AD9	B	321	336	Right-handed alpha
Helix 37	AE1	B	347	349	Right-handed 310
Helix 38	AE2	B	350	358	Right-handed alpha
Helix 39	AE3	B	364	378	Right-handed alpha
Helix 40	AE4	B	383	395	Right-handed alpha
Helix 41	AE5	D	252	264	Right-handed alpha
Helix 42	AE6	D	276	288	Right-handed alpha
Helix 43	AE7	D	300	308	Right-handed alpha
Helix 44	AE8	D	321	336	Right-handed alpha
Helix 45	AE9	D	347	349	Right-handed 310
Helix 46	AF1	D	350	358	Right-handed alpha
Helix 47	AF2	D	364	378	Right-handed alpha
Helix 48	AF3	D	383	395	Right-handed alpha
Helix 49	AF4	C	252	265	Right-handed alpha
Helix 50	AF5	C	276	288	Right-handed alpha
Helix 51	AF6	C	300	308	Right-handed alpha
Helix 52	AF7	C	321	336	Right-handed alpha
Helix 53	AF8	C	347	349	Right-handed 310
Helix 54	AF9	C	350	358	Right-handed alpha
Helix 55	AG1	C	364	378	Right-handed alpha
Helix 56	AG2	C	383	394	Right-handed alpha
Helix 57	AG3	G	252	265	Right-handed alpha
Helix 58	AG4	G	276	288	Right-handed alpha
Helix 59	AG5	G	300	308	Right-handed alpha
Helix 60	AG6	G	321	336	Right-handed alpha
Helix 61	AG7	G	347	349	Right-handed 310
Helix 62	AG8	G	350	358	Right-handed alpha
Helix 63	AG9	G	364	378	Right-handed alpha
Helix 64	AH1	G	383	394	Right-handed alpha

There are 8 sheets in PDB entry 9YGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	295	first strand
Strand 2	E	269	273	parallel
Strand 3	E	246	249	parallel
Strand 4	E	314	317	parallel
Strand 5	E	341	343	parallel
Strand 6	E	361	362	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	295	first strand
Strand 2	F	269	273	parallel
Strand 3	F	246	249	parallel
Strand 4	F	314	317	parallel
Strand 5	F	341	344	parallel
Strand 6	F	361	363	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	291	295	first strand
Strand 2	H	269	273	parallel
Strand 3	H	246	249	parallel
Strand 4	H	314	317	parallel
Strand 5	H	341	344	parallel
Strand 6	H	361	363	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	269	273	parallel
Strand 3	A	246	249	parallel
Strand 4	A	314	317	parallel
Strand 5	A	341	343	parallel
Strand 6	A	361	362	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	295	first strand
Strand 2	B	269	273	parallel
Strand 3	B	246	249	parallel
Strand 4	B	314	317	parallel
Strand 5	B	341	344	parallel
Strand 6	B	361	363	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	295	first strand
Strand 2	D	269	273	parallel
Strand 3	D	246	249	parallel
Strand 4	D	314	317	parallel
Strand 5	D	341	344	parallel
Strand 6	D	361	363	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	295	first strand
Strand 2	C	269	273	parallel
Strand 3	C	246	249	parallel
Strand 4	C	314	317	parallel
Strand 5	C	341	343	parallel
Strand 6	C	361	362	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	293	295	first strand
Strand 2	G	269	273	parallel
Strand 3	G	246	249	parallel
Strand 4	G	314	317	parallel
Strand 5	G	341	343	parallel
Strand 6	G	361	362	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YGL