Analysis of interatomic Contacts of Structural Units in PDB entry:
9YGT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YGT entry

There is 1 chain in PDB entry 9YGT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 540	GLU 2527

There are 62 helices in PDB entry 9YGT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	544	555	Right-handed alpha
Helix 2	AA2	A	559	571	Right-handed alpha
Helix 3	AA3	A	585	596	Right-handed alpha
Helix 4	AA4	A	599	604	Right-handed alpha
Helix 5	AA5	A	605	612	Right-handed alpha
Helix 6	AA6	A	625	638	Right-handed alpha
Helix 7	AA7	A	643	657	Right-handed alpha
Helix 8	AA8	A	660	670	Right-handed alpha
Helix 9	AA9	A	670	681	Right-handed alpha
Helix 10	AB1	A	689	703	Right-handed alpha
Helix 11	AB2	A	705	719	Right-handed alpha
Helix 12	AB3	A	721	731	Right-handed alpha
Helix 13	AB4	A	743	751	Right-handed alpha
Helix 14	AB5	A	754	764	Right-handed alpha
Helix 15	AB6	A	767	781	Right-handed alpha
Helix 16	AB7	A	786	795	Right-handed alpha
Helix 17	AB8	A	814	819	Right-handed alpha
Helix 18	AB9	A	833	850	Right-handed alpha
Helix 19	AC1	A	997	1001	Right-handed 310
Helix 20	AC2	A	1004	1013	Right-handed 310
Helix 21	AC3	A	1027	1034	Right-handed alpha
Helix 22	AC4	A	1053	1057	Right-handed 310
Helix 23	AC5	A	1099	1104	Right-handed 310
Helix 24	AC6	A	1189	1194	Right-handed alpha
Helix 25	AC7	A	1213	1217	Right-handed 310
Helix 26	AC8	A	1241	1245	Right-handed 310
Helix 27	AC9	A	1261	1267	Right-handed 310
Helix 28	AD1	A	1285	1291	Right-handed 310
Helix 29	AD2	A	1316	1328	Right-handed alpha
Helix 30	AD3	A	1347	1356	Right-handed alpha
Helix 31	AD4	A	1399	1403	Right-handed 310
Helix 32	AD5	A	1404	1409	Right-handed 310
Helix 33	AD6	A	1431	1442	Right-handed alpha
Helix 34	AD7	A	1465	1473	Right-handed alpha
Helix 35	AD8	A	1494	1509	Right-handed alpha
Helix 36	AD9	A	1517	1520	Right-handed 310
Helix 37	AE1	A	1525	1538	Right-handed alpha
Helix 38	AE2	A	1549	1560	Right-handed alpha
Helix 39	AE3	A	1568	1579	Right-handed alpha
Helix 40	AE4	A	1599	1608	Right-handed alpha
Helix 41	AE5	A	1645	1656	Right-handed alpha
Helix 42	AE6	A	1703	1714	Right-handed alpha
Helix 43	AE7	A	1770	1792	Right-handed alpha
Helix 44	AE8	A	1828	1835	Right-handed alpha
Helix 45	AE9	A	1865	1869	Right-handed 310
Helix 46	AF1	A	1871	1875	Right-handed 310
Helix 47	AF2	A	1881	1885	Right-handed 310
Helix 48	AF3	A	1913	1924	Right-handed alpha
Helix 49	AF4	A	1954	1962	Right-handed alpha
Helix 50	AF5	A	1963	1966	Right-handed 310
Helix 51	AF6	A	1969	1988	Right-handed alpha
Helix 52	AF7	A	1996	1998	Right-handed 310
Helix 53	AF8	A	2040	2046	Right-handed alpha
Helix 54	AF9	A	2051	2069	Right-handed alpha
Helix 55	AG1	A	2071	2077	Right-handed alpha
Helix 56	AG2	A	2079	2089	Right-handed alpha
Helix 57	AG3	A	2094	2099	Right-handed alpha
Helix 58	AG4	A	2104	2115	Right-handed alpha
Helix 59	AG5	A	2124	2134	Right-handed alpha
Helix 60	AG6	A	2278	2281	Right-handed 310
Helix 61	AG7	A	2389	2397	Right-handed alpha
Helix 62	AG8	A	2499	2527	Right-handed alpha

There are 18 sheets in PDB entry 9YGT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	804	first strand
Strand 2	A	986	988	parallel
Strand 3	A	1015	1017	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1064	first strand
Strand 2	A	1087	1089	parallel
Strand 3	A	1111	1113	parallel
Strand 4	A	1133	1135	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1177	1179	first strand
Strand 2	A	1200	1202	parallel
Strand 3	A	1224	1226	parallel
Strand 4	A	1249	1251	parallel
Strand 5	A	1272	1274	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1329	1332	first strand
Strand 2	A	1521	1524	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1373	1377	first strand
Strand 2	A	1389	1394	anti-parallel
Strand 3	A	1336	1339	parallel
Strand 4	A	1414	1415	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1582	1583	first strand
Strand 2	A	1597	1598	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1690	1694	first strand
Strand 2	A	1764	1768	anti-parallel
Strand 3	A	1746	1751	anti-parallel
Strand 4	A	1740	1743	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1850	1851	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1893	1898	first strand
Strand 2	A	1901	1906	anti-parallel
Strand 3	A	1945	1948	anti-parallel
Strand 4	A	1935	1938	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2142	2145	first strand
Strand 2	A	2490	2497	anti-parallel
Strand 3	A	2466	2476	anti-parallel
Strand 4	A	2454	2463	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2155	2157	first strand
Strand 2	A	2167	2169	anti-parallel
Strand 3	A	2180	2183	anti-parallel
Strand 4	A	2188	2191	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2207	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2224	2228	anti-parallel
Strand 4	A	2235	2237	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2251	first strand
Strand 2	A	2262	2267	anti-parallel
Strand 3	A	2275	2276	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2271	2273	first strand
Strand 2	A	2290	2292	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2303	first strand
Strand 2	A	2315	2319	anti-parallel
Strand 3	A	2322	2326	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2363	2367	anti-parallel
Strand 3	A	2372	2376	anti-parallel
Strand 4	A	2385	2388	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2425	2429	anti-parallel
Strand 3	A	2434	2437	anti-parallel
Strand 4	A	2444	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YGT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YGT