Analysis of interatomic Contacts of Structural Units in PDB entry:
9YHN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YHN entry

There is 1 chain in PDB entry 9YHN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 17VAL 844
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 9YHN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
36 51Right-handed alpha
Helix 3
AA3
A
71 86Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
123 128Right-handed alpha
Helix 6
AA6
A
137 141Right-handed alpha
Helix 7
AA7
A
149 153Right-handed 310
Helix 8
AA8
A
163 175Right-handed alpha
Helix 9
AA9
A
183 199Right-handed alpha
Helix 10
AB1
A
202 211Right-handed alpha
Helix 11
AB2
A
220 227Right-handed alpha
Helix 12
AB3
A
227 238Right-handed alpha
Helix 13
AB4
A
241 246Right-handed alpha
Helix 14
AB5
A
247 252Right-handed alpha
Helix 15
AB6
A
254 256Right-handed 310
Helix 16
AB7
A
279 284Right-handed alpha
Helix 17
AB8
A
297 299Right-handed 310
Helix 18
AB9
A
300 305Right-handed alpha
Helix 19
AC1
A
308 314Right-handed alpha
Helix 20
AC2
A
331 335Right-handed 310
Helix 21
AC3
A
340 349Right-handed alpha
Helix 22
AC4
A
368 374Right-handed alpha
Helix 23
AC5
A
384 394Right-handed alpha
Helix 24
AC6
A
413 417Right-handed 310
Helix 25
AC7
A
430 440Right-handed alpha
Helix 26
AC8
A
443 459Right-handed alpha
Helix 27
AC9
A
475 484Right-handed alpha
Helix 28
AD1
A
484 489Right-handed alpha
Helix 29
AD2
A
492 515Right-handed alpha
Helix 30
AD3
A
518 532Right-handed alpha
Helix 31
AD4
A
534 545Right-handed alpha
Helix 32
AD5
A
546 548Right-handed 310
Helix 33
AD6
A
554 573Right-handed alpha
Helix 34
AD7
A
575 589Right-handed alpha
Helix 35
AD8
A
593 595Right-handed 310
Helix 36
AD9
A
596 608Right-handed alpha
Helix 37
AE1
A
612 627Right-handed alpha
Helix 38
AE2
A
648 659Right-handed alpha
Helix 39
AE3
A
662 676Right-handed alpha
Helix 40
AE4
A
682 697Right-handed alpha
Helix 41
AE5
A
740 758Right-handed alpha
Helix 42
AE6
A
788 805Right-handed alpha
Helix 43
AE7
A
810 814Right-handed 310
Helix 44
AE8
A
815 826Right-handed alpha
Helix 45
AE9
A
829 836Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9YHN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
287 292parallel
Strand 3
A
158 161parallel
Strand 4
A
91 95parallel
Strand 5
A
132 136parallel
Strand 6
A
115 116parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
216 219anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 330first strand
Strand 2
A
468 474parallel
Strand 3
A
419 423parallel
Strand 4
A
359 363parallel
Strand 5
A
401 404parallel
Strand 6
A
378 379parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 702first strand
Strand 2
A
714 717anti-parallel
Strand 3
A
722 728anti-parallel
Strand 4
A
762 768parallel
Strand 5
A
784 787parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
738 739first strand
Strand 2
A
773 774parallel
Strand 3
A
842 843parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il