Analysis of interatomic Contacts of Structural Units in PDB entry:
9YHO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YHO entry

There are 12 chains in PDB entry 9YHO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 519	ASP 664
B	SER 519	ASP 664
C	SER 519	ASP 664
E	ASN 33	VAL 505
F	ASN 33	VAL 505
G	ASN 33	VAL 505
H	GLN 1	VAL 111
J	GLN 1	VAL 111
K	VAL 2	LYS 107
L	VAL 2	LYS 107
M	GLN 1	VAL 111
N	VAL 2	LYS 107

There are 57 helices in PDB entry 9YHO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	529	534	Right-handed alpha
Helix 2	AA2	A	537	542	Right-handed alpha
Helix 3	AA3	A	543	545	Right-handed 310
Helix 4	AA4	A	573	596	Right-handed alpha
Helix 5	AA5	A	618	625	Right-handed alpha
Helix 6	AA6	A	627	635	Right-handed alpha
Helix 7	AA7	A	638	649	Right-handed alpha
Helix 8	AA8	A	653	663	Right-handed alpha
Helix 9	AA9	B	529	534	Right-handed alpha
Helix 10	AB1	B	537	542	Right-handed alpha
Helix 11	AB2	B	543	545	Right-handed 310
Helix 12	AB3	B	573	596	Right-handed alpha
Helix 13	AB4	B	618	625	Right-handed alpha
Helix 14	AB5	B	627	635	Right-handed alpha
Helix 15	AB6	B	638	649	Right-handed alpha
Helix 16	AB7	B	653	663	Right-handed alpha
Helix 17	AB8	C	529	534	Right-handed alpha
Helix 18	AB9	C	537	542	Right-handed alpha
Helix 19	AC1	C	543	545	Right-handed 310
Helix 20	AC2	C	573	596	Right-handed alpha
Helix 21	AC3	C	618	625	Right-handed alpha
Helix 22	AC4	C	627	635	Right-handed alpha
Helix 23	AC5	C	638	649	Right-handed alpha
Helix 24	AC6	C	653	663	Right-handed alpha
Helix 25	AC7	E	99	117	Right-handed alpha
Helix 26	AC8	E	122	126	Right-handed 310
Helix 27	AC9	E	177	179	Right-handed 310
Helix 28	AD1	E	335	353	Right-handed alpha
Helix 29	AD2	E	368	373	Right-handed alpha
Helix 30	AD3	E	425	429	Right-handed 310
Helix 31	AD4	E	474	483	Right-handed alpha
Helix 32	AD5	F	99	117	Right-handed alpha
Helix 33	AD6	F	122	126	Right-handed 310
Helix 34	AD7	F	177	179	Right-handed 310
Helix 35	AD8	F	335	353	Right-handed alpha
Helix 36	AD9	F	368	373	Right-handed alpha
Helix 37	AE1	F	425	429	Right-handed 310
Helix 38	AE2	F	474	483	Right-handed alpha
Helix 39	AE3	G	99	117	Right-handed alpha
Helix 40	AE4	G	122	126	Right-handed 310
Helix 41	AE5	G	177	179	Right-handed 310
Helix 42	AE6	G	335	353	Right-handed alpha
Helix 43	AE7	G	368	373	Right-handed alpha
Helix 44	AE8	G	425	429	Right-handed 310
Helix 45	AE9	G	474	483	Right-handed alpha
Helix 46	AF1	H	61	64	Right-handed 310
Helix 47	AF2	H	83	87	Right-handed 310
Helix 48	AF3	H	99	100	Right-handed alpha
Helix 49	AF4	J	61	64	Right-handed 310
Helix 50	AF5	J	83	87	Right-handed 310
Helix 51	AF6	J	99	100	Right-handed alpha
Helix 52	AF7	K	79	83	Right-handed 310
Helix 53	AF8	L	79	83	Right-handed 310
Helix 54	AF9	M	61	64	Right-handed 310
Helix 55	AG1	M	83	87	Right-handed 310
Helix 56	AG2	M	99	100	Right-handed alpha
Helix 57	AG3	N	79	83	Right-handed 310

There are 42 sheets in PDB entry 9YHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	609	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	495	499	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	495	499	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	609	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	G	495	499	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	174	first strand
Strand 2	E	157	162	anti-parallel
Strand 3	E	129	131	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	443	456	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	413	420	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	443	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	358	361	parallel
Strand 6	E	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	308	first strand
Strand 2	E	316	323	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	237	239	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	174	first strand
Strand 2	F	157	162	anti-parallel
Strand 3	F	129	131	anti-parallel
Strand 4	F	190	193	anti-parallel
Strand 5	F	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	261	first strand
Strand 2	F	443	456	anti-parallel
Strand 3	F	284	298	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	413	420	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	298	anti-parallel
Strand 3	F	443	456	anti-parallel
Strand 4	F	465	470	anti-parallel
Strand 5	F	358	361	parallel
Strand 6	F	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	308	first strand
Strand 2	F	316	323	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	424	first strand
Strand 2	F	434	435	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	56	first strand
Strand 2	G	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	237	239	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	174	first strand
Strand 2	G	157	162	anti-parallel
Strand 3	G	129	131	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	261	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	413	420	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	308	first strand
Strand 2	G	316	323	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	424	first strand
Strand 2	G	434	435	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	89	96	anti-parallel
Strand 5	H	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	45	52	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	89	96	anti-parallel
Strand 5	J	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	46	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	46	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	45	52	anti-parallel
Strand 3	M	33	39	anti-parallel
Strand 4	M	89	96	anti-parallel
Strand 5	M	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	84	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	46	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	84	90	anti-parallel
Strand 4	N	97	98	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YHO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YHO