Analysis of interatomic Contacts of Structural Units in PDB entry:
9YHS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YHS entry

There are 12 chains in PDB entry 9YHS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	VAL 2	SER 113
L	ASP 1	LYS 107
J	VAL 2	SER 113
K	ASP 1	LYS 107
M	VAL 2	SER 113
N	ASP 1	LYS 107
B	SER 519	ASP 664
C	SER 519	ASP 664
F	ASN 33	VAL 505
G	ASN 33	VAL 505
A	SER 519	ASP 664
E	ASN 33	VAL 505

There are 60 helices in PDB entry 9YHS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	63	67	Right-handed 310
Helix 2	AA2	H	83	87	Right-handed 310
Helix 3	AA3	L	79	83	Right-handed 310
Helix 4	AA4	J	63	67	Right-handed 310
Helix 5	AA5	J	83	87	Right-handed 310
Helix 6	AA6	K	79	83	Right-handed 310
Helix 7	AA7	M	63	67	Right-handed 310
Helix 8	AA8	M	83	87	Right-handed 310
Helix 9	AA9	N	79	83	Right-handed 310
Helix 10	AB1	B	523	527	Right-handed 310
Helix 11	AB2	B	529	534	Right-handed alpha
Helix 12	AB3	B	536	543	Right-handed alpha
Helix 13	AB4	B	544	546	Right-handed 310
Helix 14	AB5	B	573	596	Right-handed alpha
Helix 15	AB6	B	618	624	Right-handed alpha
Helix 16	AB7	B	627	635	Right-handed alpha
Helix 17	AB8	B	638	650	Right-handed alpha
Helix 18	AB9	B	653	664	Right-handed alpha
Helix 19	AC1	C	523	527	Right-handed 310
Helix 20	AC2	C	529	534	Right-handed alpha
Helix 21	AC3	C	536	543	Right-handed alpha
Helix 22	AC4	C	544	546	Right-handed 310
Helix 23	AC5	C	573	596	Right-handed alpha
Helix 24	AC6	C	618	624	Right-handed alpha
Helix 25	AC7	C	627	635	Right-handed alpha
Helix 26	AC8	C	638	650	Right-handed alpha
Helix 27	AC9	C	653	664	Right-handed alpha
Helix 28	AD1	F	94	97	Right-handed 310
Helix 29	AD2	F	98	117	Right-handed alpha
Helix 30	AD3	F	122	126	Right-handed 310
Helix 31	AD4	F	177	179	Right-handed 310
Helix 32	AD5	F	335	353	Right-handed alpha
Helix 33	AD6	F	368	373	Right-handed alpha
Helix 34	AD7	F	425	429	Right-handed 310
Helix 35	AD8	F	474	483	Right-handed alpha
Helix 36	AD9	G	94	97	Right-handed 310
Helix 37	AE1	G	98	117	Right-handed alpha
Helix 38	AE2	G	122	126	Right-handed 310
Helix 39	AE3	G	177	179	Right-handed 310
Helix 40	AE4	G	335	353	Right-handed alpha
Helix 41	AE5	G	368	373	Right-handed alpha
Helix 42	AE6	G	425	429	Right-handed 310
Helix 43	AE7	G	474	483	Right-handed alpha
Helix 44	AE8	A	523	527	Right-handed 310
Helix 45	AE9	A	529	534	Right-handed alpha
Helix 46	AF1	A	536	543	Right-handed alpha
Helix 47	AF2	A	544	546	Right-handed 310
Helix 48	AF3	A	573	596	Right-handed alpha
Helix 49	AF4	A	618	624	Right-handed alpha
Helix 50	AF5	A	627	635	Right-handed alpha
Helix 51	AF6	A	638	650	Right-handed alpha
Helix 52	AF7	A	653	664	Right-handed alpha
Helix 53	AF8	E	94	97	Right-handed 310
Helix 54	AF9	E	98	117	Right-handed alpha
Helix 55	AG1	E	122	126	Right-handed 310
Helix 56	AG2	E	177	179	Right-handed 310
Helix 57	AG3	E	335	353	Right-handed alpha
Helix 58	AG4	E	368	373	Right-handed alpha
Helix 59	AG5	E	425	429	Right-handed 310
Helix 60	AG6	E	474	483	Right-handed alpha

There are 48 sheets in PDB entry 9YHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	110	111	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	50	first strand
Strand 2	H	35	39	anti-parallel
Strand 3	H	89	93	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	21	25	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	110	111	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	50	first strand
Strand 2	J	35	39	anti-parallel
Strand 3	J	89	93	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	65	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	102	105	parallel
Strand 3	K	84	89	anti-parallel
Strand 4	K	34	38	anti-parallel
Strand 5	K	44	49	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	21	25	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	110	111	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	46	50	first strand
Strand 2	M	35	39	anti-parallel
Strand 3	M	89	93	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	65	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	102	105	parallel
Strand 3	N	84	89	anti-parallel
Strand 4	N	34	38	anti-parallel
Strand 5	N	44	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	495	499	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	609	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	G	495	499	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	487	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	83	85	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	237	239	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	130	first strand
Strand 2	F	190	193	anti-parallel
Strand 3	F	181	183	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	162	first strand
Strand 2	F	169	174	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	447	456	anti-parallel
Strand 3	F	293	294	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	274	first strand
Strand 2	F	284	287	anti-parallel
Strand 3	F	447	456	anti-parallel
Strand 4	F	465	470	anti-parallel
Strand 5	F	358	361	parallel
Strand 6	F	394	395	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	307	first strand
Strand 2	F	317	324	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	331	334	first strand
Strand 2	F	413	416	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	378	first strand
Strand 2	F	381	385	anti-parallel
Strand 3	F	418	420	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	424	first strand
Strand 2	F	434	435	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	487	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	85	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	237	239	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	130	first strand
Strand 2	G	190	193	anti-parallel
Strand 3	G	181	183	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	162	first strand
Strand 2	G	169	174	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	447	456	anti-parallel
Strand 3	G	293	294	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	284	287	anti-parallel
Strand 3	G	447	456	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	394	395	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	300	307	first strand
Strand 2	G	317	324	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	331	334	first strand
Strand 2	G	413	416	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	anti-parallel
Strand 3	G	418	420	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	424	first strand
Strand 2	G	434	435	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	609	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	495	499	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	487	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	85	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	190	193	anti-parallel
Strand 3	E	181	183	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	162	first strand
Strand 2	E	169	174	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	447	456	anti-parallel
Strand 3	E	293	294	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	284	287	anti-parallel
Strand 3	E	447	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	358	361	parallel
Strand 6	E	394	395	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	307	first strand
Strand 2	E	317	324	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	334	first strand
Strand 2	E	413	416	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	378	first strand
Strand 2	E	381	385	anti-parallel
Strand 3	E	418	420	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YHS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YHS