Analysis of interatomic Contacts of Structural Units in PDB entry:
9YIG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YIG entry

There are 12 chains in PDB entry 9YIG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 519	ASP 664
B	SER 519	ASP 664
C	SER 519	ASP 664
E	ASN 33	VAL 505
F	ASN 33	VAL 505
G	LEU 34	VAL 505
H	VAL 2	VAL 111
J	VAL 2	VAL 111
K	ASP 1	LYS 107
L	ASP 1	LYS 107
M	VAL 2	VAL 111
N	ASP 1	LYS 107

There are 42 helices in PDB entry 9YIG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	529	534	Right-handed alpha
Helix 2	AA2	A	536	543	Right-handed alpha
Helix 3	AA3	A	573	596	Right-handed alpha
Helix 4	AA4	A	618	625	Right-handed alpha
Helix 5	AA5	A	627	635	Right-handed alpha
Helix 6	AA6	A	638	651	Right-handed alpha
Helix 7	AA7	A	653	664	Right-handed alpha
Helix 8	AA8	B	529	534	Right-handed alpha
Helix 9	AA9	B	536	543	Right-handed alpha
Helix 10	AB1	B	573	596	Right-handed alpha
Helix 11	AB2	B	618	625	Right-handed alpha
Helix 12	AB3	B	627	635	Right-handed alpha
Helix 13	AB4	B	638	651	Right-handed alpha
Helix 14	AB5	B	653	664	Right-handed alpha
Helix 15	AB6	C	529	534	Right-handed alpha
Helix 16	AB7	C	536	543	Right-handed alpha
Helix 17	AB8	C	573	596	Right-handed alpha
Helix 18	AB9	C	618	625	Right-handed alpha
Helix 19	AC1	C	627	635	Right-handed alpha
Helix 20	AC2	C	638	651	Right-handed alpha
Helix 21	AC3	C	653	664	Right-handed alpha
Helix 22	AC4	E	99	117	Right-handed alpha
Helix 23	AC5	E	177	179	Right-handed 310
Helix 24	AC6	E	335	353	Right-handed alpha
Helix 25	AC7	E	368	373	Right-handed alpha
Helix 26	AC8	E	425	429	Right-handed 310
Helix 27	AC9	E	474	483	Right-handed alpha
Helix 28	AD1	F	99	117	Right-handed alpha
Helix 29	AD2	F	177	179	Right-handed 310
Helix 30	AD3	F	335	353	Right-handed alpha
Helix 31	AD4	F	368	373	Right-handed alpha
Helix 32	AD5	F	425	429	Right-handed 310
Helix 33	AD6	F	474	483	Right-handed alpha
Helix 34	AD7	G	99	117	Right-handed alpha
Helix 35	AD8	G	177	179	Right-handed 310
Helix 36	AD9	G	335	353	Right-handed alpha
Helix 37	AE1	G	368	373	Right-handed alpha
Helix 38	AE2	G	425	429	Right-handed 310
Helix 39	AE3	G	474	483	Right-handed alpha
Helix 40	AE4	H	60	64	Right-handed 310
Helix 41	AE5	J	60	64	Right-handed 310
Helix 42	AE6	M	60	64	Right-handed 310

There are 48 sheets in PDB entry 9YIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	609	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	495	499	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	609	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	495	499	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	609	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	G	495	499	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	85	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	54	56	parallel
Strand 3	E	216	217	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	190	193	anti-parallel
Strand 3	E	181	183	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	162	first strand
Strand 2	E	169	173	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	434	435	parallel
Strand 3	E	423	424	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	446	456	anti-parallel
Strand 3	E	284	297	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	413	420	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	374	378	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	297	anti-parallel
Strand 3	E	446	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	358	361	parallel
Strand 6	E	393	395	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	308	first strand
Strand 2	E	316	323	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	83	85	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	54	56	parallel
Strand 3	F	216	217	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	237	239	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	130	first strand
Strand 2	F	190	193	anti-parallel
Strand 3	F	181	183	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	162	first strand
Strand 2	F	169	173	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	203	first strand
Strand 2	F	434	435	parallel
Strand 3	F	423	424	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	446	456	anti-parallel
Strand 3	F	284	297	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	413	420	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	297	anti-parallel
Strand 3	F	446	456	anti-parallel
Strand 4	F	465	470	anti-parallel
Strand 5	F	358	361	parallel
Strand 6	F	393	395	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	308	first strand
Strand 2	F	316	323	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	85	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	54	56	parallel
Strand 3	G	216	217	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	237	239	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	130	first strand
Strand 2	G	190	193	anti-parallel
Strand 3	G	181	183	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	162	first strand
Strand 2	G	169	173	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	203	first strand
Strand 2	G	434	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	446	456	anti-parallel
Strand 3	G	284	297	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	413	420	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	297	anti-parallel
Strand 3	G	446	456	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	393	395	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	308	first strand
Strand 2	G	316	323	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	18	22	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	46	51	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	7	first strand
Strand 2	J	18	22	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	89	94	anti-parallel
Strand 4	J	35	39	anti-parallel
Strand 5	J	46	51	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	89	94	anti-parallel
Strand 4	J	102	103	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	103	105	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	70	75	anti-parallel
Strand 3	K	62	67	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	44	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	88	90	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	105	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	44	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	88	90	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	7	first strand
Strand 2	M	18	22	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	11	first strand
Strand 2	M	107	110	parallel
Strand 3	M	89	94	anti-parallel
Strand 4	M	35	39	anti-parallel
Strand 5	M	46	51	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	11	first strand
Strand 2	M	107	110	parallel
Strand 3	M	89	94	anti-parallel
Strand 4	M	102	103	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	103	105	parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	23	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	67	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	44	49	anti-parallel
Strand 3	N	33	38	anti-parallel
Strand 4	N	88	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YIG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YIG