Analysis of interatomic Contacts of Structural Units in PDB entry:
9YIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YIN entry

There is 1 chain in PDB entry 9YIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29ASN 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9YIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 46Right-handed alpha
Helix 2
AA2
A
52 63Right-handed alpha
Helix 3
AA3
A
63 79Right-handed alpha
Helix 4
AA4
A
95 122Right-handed alpha
Helix 5
AA5
A
142 149Right-handed alpha
Helix 6
AA6
A
150 152Right-handed 310
Helix 7
AA7
A
190 192Right-handed 310
Helix 8
AA8
A
208 210Right-handed 310
Helix 9
AA9
A
223 227Right-handed 310
Helix 10
AB1
A
234 256Right-handed alpha
Helix 11
AB2
A
270 278Right-handed alpha
Helix 12
AB3
A
281 299Right-handed alpha
Helix 13
AB4
A
320 336Right-handed alpha
Helix 14
AB5
A
339 344Right-handed alpha
Helix 15
AB6
A
350 371Right-handed alpha
Helix 16
AB7
A
371 386Right-handed alpha
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There are 4 sheets in PDB entry 9YIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
397 400anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 160first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
212 215anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
204 207anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
310 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il