Analysis of interatomic Contacts of Structural Units in PDB entry:
9YJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YJN entry

There is 1 chain in PDB entry 9YJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58MET 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9YJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 72Right-handed alpha
Helix 2
AA2
A
86 95Right-handed alpha
Helix 3
AA3
A
96 98Right-handed 310
Helix 4
AA4
A
150 158Right-handed alpha
Helix 5
AA5
A
205 211Right-handed alpha
Helix 6
AA6
A
211 219Right-handed alpha
Helix 7
AA7
A
222 243Right-handed alpha
Helix 8
AA8
A
282 292Right-handed alpha
Helix 9
AA9
A
328 348Right-handed alpha
Helix 10
AB1
A
381 390Right-handed alpha
Helix 11
AB2
A
399 413Right-handed alpha
Helix 12
AB3
A
422 434Right-handed alpha
Helix 13
AB4
A
449 453Right-handed 310
Helix 14
AB5
A
487 504Right-handed alpha
Helix 15
AB6
A
513 521Right-handed alpha
Helix 16
AB7
A
534 542Right-handed alpha
Helix 17
AB8
A
546 551Right-handed 310
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There are 5 sheets in PDB entry 9YJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 120first strand
Strand 2
A
125 132anti-parallel
Strand 3
A
135 142anti-parallel
Strand 4
A
178 189parallel
Strand 5
A
163 172anti-parallel
Strand 6
A
104 120anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
296 304parallel
Strand 3
A
316 325anti-parallel
Strand 4
A
527 533anti-parallel
Strand 5
A
476 483anti-parallel
Strand 6
A
468 473anti-parallel
Strand 7
A
443 446anti-parallel
Strand 8
A
377 380parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
274 278anti-parallel
Strand 3
A
266 269anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
368 371anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
462 466anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il