Analysis of interatomic Contacts of Structural Units in PDB entry:
9YJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YJT entry

There are 12 chains in PDB entry 9YJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	PHE 26	ARG 166
A	GLN 27	ARG 166
B	MET 23	ARG 166
C	PHE 26	ALA 165
D	PHE 26	ALA 165
E	PHE 26	ARG 166
F	THR 25	ARG 166
G	GLN 27	ALA 165
H	GLN 27	ARG 166
I	PHE 26	ARG 166
J	THR 25	ARG 166
L	ASP 24	ARG 166

There are 65 helices in PDB entry 9YJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	33	41	Right-handed alpha
Helix 2	AA2	K	41	55	Right-handed alpha
Helix 3	AA3	K	55	79	Right-handed alpha
Helix 4	AA4	K	85	138	Right-handed alpha
Helix 5	AA5	K	151	154	Right-handed 310
Helix 6	AA6	K	155	164	Right-handed alpha
Helix 7	AA7	A	33	41	Right-handed alpha
Helix 8	AA8	A	41	55	Right-handed alpha
Helix 9	AA9	A	55	74	Right-handed alpha
Helix 10	AB1	A	87	135	Right-handed alpha
Helix 11	AB2	A	151	154	Right-handed 310
Helix 12	AB3	A	155	162	Right-handed alpha
Helix 13	AB4	B	33	41	Right-handed alpha
Helix 14	AB5	B	41	76	Right-handed alpha
Helix 15	AB6	B	84	138	Right-handed alpha
Helix 16	AB7	B	151	154	Right-handed 310
Helix 17	AB8	B	155	162	Right-handed alpha
Helix 18	AB9	C	33	38	Right-handed alpha
Helix 19	AC1	C	41	76	Right-handed alpha
Helix 20	AC2	C	83	138	Right-handed alpha
Helix 21	AC3	C	151	154	Right-handed 310
Helix 22	AC4	C	155	164	Right-handed alpha
Helix 23	AC5	D	33	40	Right-handed alpha
Helix 24	AC6	D	42	55	Right-handed alpha
Helix 25	AC7	D	56	76	Right-handed alpha
Helix 26	AC8	D	85	137	Right-handed alpha
Helix 27	AC9	D	155	164	Right-handed alpha
Helix 28	AD1	E	33	41	Right-handed alpha
Helix 29	AD2	E	41	80	Right-handed alpha
Helix 30	AD3	E	84	89	Right-handed 310
Helix 31	AD4	E	90	137	Right-handed alpha
Helix 32	AD5	E	151	154	Right-handed 310
Helix 33	AD6	E	155	164	Right-handed alpha
Helix 34	AD7	F	33	41	Right-handed alpha
Helix 35	AD8	F	41	55	Right-handed alpha
Helix 36	AD9	F	55	76	Right-handed alpha
Helix 37	AE1	F	86	138	Right-handed alpha
Helix 38	AE2	F	150	154	Right-handed 310
Helix 39	AE3	F	155	162	Right-handed alpha
Helix 40	AE4	G	39	55	Right-handed alpha
Helix 41	AE5	G	56	73	Right-handed alpha
Helix 42	AE6	G	74	77	Right-handed 310
Helix 43	AE7	G	84	137	Right-handed alpha
Helix 44	AE8	G	151	154	Right-handed 310
Helix 45	AE9	G	155	162	Right-handed alpha
Helix 46	AF1	H	33	40	Right-handed alpha
Helix 47	AF2	H	41	79	Right-handed alpha
Helix 48	AF3	H	85	138	Right-handed alpha
Helix 49	AF4	H	151	154	Right-handed 310
Helix 50	AF5	H	155	164	Right-handed alpha
Helix 51	AF6	I	41	55	Right-handed alpha
Helix 52	AF7	I	55	78	Right-handed alpha
Helix 53	AF8	I	84	138	Right-handed alpha
Helix 54	AF9	I	151	154	Right-handed 310
Helix 55	AG1	I	155	164	Right-handed alpha
Helix 56	AG2	J	33	41	Right-handed alpha
Helix 57	AG3	J	41	75	Right-handed alpha
Helix 58	AG4	J	83	138	Right-handed alpha
Helix 59	AG5	J	150	154	Right-handed 310
Helix 60	AG6	J	155	164	Right-handed alpha
Helix 61	AG7	L	33	38	Right-handed alpha
Helix 62	AG8	L	41	55	Right-handed alpha
Helix 63	AG9	L	55	76	Right-handed alpha
Helix 64	AH1	L	84	138	Right-handed alpha
Helix 65	AH2	L	155	162	Right-handed alpha

There are 12 sheets in PDB entry 9YJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	31	first strand
Strand 2	K	141	143	parallel
Strand 3	A	148	149	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	146	149	first strand
Strand 2	L	141	143	anti-parallel
Strand 3	L	29	31	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	141	143	parallel
Strand 3	L	148	149	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	141	143	parallel
Strand 3	C	148	149	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	D	141	144	anti-parallel
Strand 3	D	29	32	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	141	143	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	31	first strand
Strand 2	E	139	143	parallel
Strand 3	G	148	149	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	F	141	143	anti-parallel
Strand 3	F	29	31	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	141	143	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	141	143	parallel
Strand 3	I	148	149	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	149	first strand
Strand 2	J	141	143	anti-parallel
Strand 3	J	29	31	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	31	first strand
Strand 2	I	141	143	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YJT