Analysis of interatomic Contacts of Structural Units in PDB entry:
9YJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YJZ entry

There are 2 chains in PDB entry 9YJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 145LYS 752
B
 MET 145LYS 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9YJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
152 164Right-handed alpha
Helix 2
AA2
A
177 184Right-handed alpha
Helix 3
AA3
A
197 213Right-handed alpha
Helix 4
AA4
A
223 228Right-handed alpha
Helix 5
AA5
A
229 240Right-handed alpha
Helix 6
AA6
A
264 270Right-handed alpha
Helix 7
AA7
A
271 273Right-handed 310
Helix 8
AA8
A
284 298Right-handed alpha
Helix 9
AA9
A
310 315Right-handed alpha
Helix 10
AB1
A
346 359Right-handed alpha
Helix 11
AB2
A
369 374Right-handed 310
Helix 12
AB3
A
375 389Right-handed alpha
Helix 13
AB4
A
418 428Right-handed alpha
Helix 14
AB5
A
439 444Right-handed alpha
Helix 15
AB6
A
445 449Right-handed 310
Helix 16
AB7
A
450 459Right-handed alpha
Helix 17
AB8
A
487 496Right-handed alpha
Helix 18
AB9
A
497 499Right-handed 310
Helix 19
AC1
A
505 519Right-handed alpha
Helix 20
AC2
A
534 546Right-handed alpha
Helix 21
AC3
A
547 553Right-handed 310
Helix 22
AC4
A
560 570Right-handed alpha
Helix 23
AC5
A
589 601Right-handed alpha
Helix 24
AC6
A
612 618Right-handed alpha
Helix 25
AC7
A
621 629Right-handed alpha
Helix 26
AC8
A
642 653Right-handed alpha
Helix 27
AC9
A
666 675Right-handed alpha
Helix 28
AD1
A
683 685Right-handed 310
Helix 29
AD2
A
686 697Right-handed alpha
Helix 30
AD3
A
730 744Right-handed alpha
Helix 31
AD4
B
152 164Right-handed alpha
Helix 32
AD5
B
177 184Right-handed alpha
Helix 33
AD6
B
197 213Right-handed alpha
Helix 34
AD7
B
223 228Right-handed alpha
Helix 35
AD8
B
229 240Right-handed alpha
Helix 36
AD9
B
264 270Right-handed alpha
Helix 37
AE1
B
271 273Right-handed 310
Helix 38
AE2
B
284 297Right-handed alpha
Helix 39
AE3
B
310 315Right-handed alpha
Helix 40
AE4
B
346 359Right-handed alpha
Helix 41
AE5
B
369 374Right-handed 310
Helix 42
AE6
B
375 389Right-handed alpha
Helix 43
AE7
B
418 428Right-handed alpha
Helix 44
AE8
B
439 444Right-handed alpha
Helix 45
AE9
B
445 449Right-handed 310
Helix 46
AF1
B
450 459Right-handed alpha
Helix 47
AF2
B
487 496Right-handed alpha
Helix 48
AF3
B
497 499Right-handed 310
Helix 49
AF4
B
505 519Right-handed alpha
Helix 50
AF5
B
534 546Right-handed alpha
Helix 51
AF6
B
547 553Right-handed 310
Helix 52
AF7
B
560 570Right-handed alpha
Helix 53
AF8
B
589 601Right-handed alpha
Helix 54
AF9
B
612 618Right-handed alpha
Helix 55
AG1
B
621 629Right-handed alpha
Helix 56
AG2
B
642 653Right-handed alpha
Helix 57
AG3
B
666 675Right-handed alpha
Helix 58
AG4
B
683 685Right-handed 310
Helix 59
AG5
B
686 697Right-handed alpha
Helix 60
AG6
B
730 744Right-handed alpha
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There are 6 sheets in PDB entry 9YJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
168 171parallel
Strand 3
A
216 220parallel
Strand 4
A
243 249parallel
Strand 5
A
303 309parallel
Strand 6
A
275 278parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
363 367parallel
Strand 3
A
430 434parallel
Strand 4
A
463 468parallel
Strand 5
A
482 485parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
555 557parallel
Strand 3
A
607 611parallel
Strand 4
A
633 638parallel
Strand 5
A
701 706parallel
Strand 6
A
679 681parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
168 171parallel
Strand 3
B
216 220parallel
Strand 4
B
243 249parallel
Strand 5
B
303 309parallel
Strand 6
B
275 278parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
363 367parallel
Strand 3
B
430 434parallel
Strand 4
B
463 468parallel
Strand 5
B
482 485parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
578 579first strand
Strand 2
B
555 557parallel
Strand 3
B
607 611parallel
Strand 4
B
633 638parallel
Strand 5
B
701 706parallel
Strand 6
B
679 681parallel
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