Analysis of interatomic Contacts of Structural Units in PDB entry:
9YK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YK9 entry

There are 13 chains in PDB entry 9YK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	PHE 375
B	ASP 1	PHE 375
C	ASP 1	PHE 375
D	ASP 1	PHE 375
E	GLU 250	ILE 284
F	GLU 250	ILE 284
G	MET 1	ALA 155
H	MET 1	ALA 155
I	VAL 84	GLU 130
J	ALA 4	ARG 808
K	ALA 4	ARG 808
L	ILE 43	ALA 195
M	ILE 43	ALA 195

There are182 helices in PDB entry 9YK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	63	Right-handed 310
Helix 2	AA2	A	78	93	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	113	126	Right-handed alpha
Helix 5	AA5	A	138	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	192	Right-handed alpha
Helix 8	AA8	A	193	197	Right-handed 310
Helix 9	AA9	A	202	204	Right-handed 310
Helix 10	AB1	A	205	217	Right-handed alpha
Helix 11	AB2	A	222	233	Right-handed alpha
Helix 12	AB3	A	252	257	Right-handed alpha
Helix 13	AB4	A	258	262	Right-handed 310
Helix 14	AB5	A	263	267	Right-handed 310
Helix 15	AB6	A	273	284	Right-handed alpha
Helix 16	AB7	A	289	294	Right-handed alpha
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	334	338	Right-handed 310
Helix 19	AC1	A	339	347	Right-handed alpha
Helix 20	AC2	A	348	355	Right-handed 310
Helix 21	AC3	A	359	363	Right-handed alpha
Helix 22	AC4	A	364	372	Right-handed 310
Helix 23	AC5	B	55	61	Right-handed alpha
Helix 24	AC6	B	78	92	Right-handed alpha
Helix 25	AC7	B	113	126	Right-handed alpha
Helix 26	AC8	B	137	145	Right-handed alpha
Helix 27	AC9	B	172	175	Right-handed 310
Helix 28	AD1	B	181	193	Right-handed alpha
Helix 29	AD2	B	194	197	Right-handed 310
Helix 30	AD3	B	205	217	Right-handed alpha
Helix 31	AD4	B	222	231	Right-handed alpha
Helix 32	AD5	B	252	257	Right-handed alpha
Helix 33	AD6	B	258	262	Right-handed 310
Helix 34	AD7	B	263	268	Right-handed 310
Helix 35	AD8	B	273	285	Right-handed alpha
Helix 36	AD9	B	289	296	Right-handed alpha
Helix 37	AE1	B	302	306	Right-handed 310
Helix 38	AE2	B	308	319	Right-handed alpha
Helix 39	AE3	B	334	336	Right-handed 310
Helix 40	AE4	B	337	349	Right-handed alpha
Helix 41	AE5	B	350	355	Right-handed 310
Helix 42	AE6	B	359	363	Right-handed alpha
Helix 43	AE7	B	364	372	Right-handed 310
Helix 44	AE8	C	55	61	Right-handed alpha
Helix 45	AE9	C	79	92	Right-handed alpha
Helix 46	AF1	C	112	126	Right-handed alpha
Helix 47	AF2	C	137	146	Right-handed alpha
Helix 48	AF3	C	172	175	Right-handed 310
Helix 49	AF4	C	181	193	Right-handed alpha
Helix 50	AF5	C	194	197	Right-handed 310
Helix 51	AF6	C	205	216	Right-handed alpha
Helix 52	AF7	C	222	233	Right-handed alpha
Helix 53	AF8	C	252	257	Right-handed alpha
Helix 54	AF9	C	258	262	Right-handed 310
Helix 55	AG1	C	263	267	Right-handed 310
Helix 56	AG2	C	273	284	Right-handed alpha
Helix 57	AG3	C	289	296	Right-handed alpha
Helix 58	AG4	C	301	305	Right-handed 310
Helix 59	AG5	C	308	319	Right-handed alpha
Helix 60	AG6	C	334	336	Right-handed 310
Helix 61	AG7	C	337	347	Right-handed alpha
Helix 62	AG8	C	348	349	Right-handed 310
Helix 63	AG9	C	350	356	Right-handed 310
Helix 64	AH1	C	359	366	Right-handed alpha
Helix 65	AH2	C	367	372	Right-handed 310
Helix 66	AH3	D	55	60	Right-handed alpha
Helix 67	AH4	D	78	93	Right-handed alpha
Helix 68	AH5	D	97	101	Right-handed 310
Helix 69	AH6	D	113	126	Right-handed alpha
Helix 70	AH7	D	136	145	Right-handed alpha
Helix 71	AH8	D	172	175	Right-handed 310
Helix 72	AH9	D	183	193	Right-handed alpha
Helix 73	AI1	D	194	197	Right-handed 310
Helix 74	AI2	D	202	204	Right-handed 310
Helix 75	AI3	D	205	217	Right-handed alpha
Helix 76	AI4	D	222	233	Right-handed alpha
Helix 77	AI5	D	252	257	Right-handed alpha
Helix 78	AI6	D	258	262	Right-handed 310
Helix 79	AI7	D	273	284	Right-handed alpha
Helix 80	AI8	D	285	290	Right-handed 310
Helix 81	AI9	D	292	295	Right-handed 310
Helix 82	AJ1	D	301	306	Right-handed 310
Helix 83	AJ2	D	308	321	Right-handed alpha
Helix 84	AJ3	D	337	347	Right-handed alpha
Helix 85	AJ4	D	351	355	Right-handed 310
Helix 86	AJ5	D	359	366	Right-handed alpha
Helix 87	AJ6	D	367	370	Right-handed 310
Helix 88	AJ7	E	251	284	Right-handed alpha
Helix 89	AJ8	F	251	282	Right-handed alpha
Helix 90	AJ9	G	2	155	Right-handed alpha
Helix 91	AK1	H	2	155	Right-handed alpha
Helix 92	AK2	I	85	130	Right-handed alpha
Helix 93	AK3	J	5	17	Right-handed 310
Helix 94	AK4	J	21	26	Right-handed alpha
Helix 95	AK5	J	81	85	Right-handed 310
Helix 96	AK6	J	89	93	Right-handed 310
Helix 97	AK7	J	97	111	Right-handed alpha
Helix 98	AK8	J	135	142	Right-handed alpha
Helix 99	AK9	J	153	169	Right-handed alpha
Helix 100	AL1	J	183	199	Right-handed alpha
Helix 101	AL2	J	216	231	Right-handed alpha
Helix 102	AL3	J	284	289	Right-handed alpha
Helix 103	AL4	J	294	302	Right-handed alpha
Helix 104	AL5	J	306	309	Right-handed 310
Helix 105	AL6	J	310	315	Right-handed alpha
Helix 106	AL7	J	324	338	Right-handed alpha
Helix 107	AL8	J	342	359	Right-handed alpha
Helix 108	AL9	J	360	362	Right-handed 310
Helix 109	AM1	J	378	389	Right-handed alpha
Helix 110	AM2	J	391	401	Right-handed alpha
Helix 111	AM3	J	416	447	Right-handed alpha
Helix 112	AM4	J	472	505	Right-handed alpha
Helix 113	AM5	J	514	526	Right-handed alpha
Helix 114	AM6	J	529	537	Right-handed alpha
Helix 115	AM7	J	544	555	Right-handed alpha
Helix 116	AM8	J	593	598	Right-handed alpha
Helix 117	AM9	J	602	611	Right-handed alpha
Helix 118	AN1	J	615	621	Right-handed alpha
Helix 119	AN2	J	641	645	Right-handed 310
Helix 120	AN3	J	646	663	Right-handed alpha
Helix 121	AN4	J	685	696	Right-handed alpha
Helix 122	AN5	J	697	708	Right-handed alpha
Helix 123	AN6	J	715	722	Right-handed alpha
Helix 124	AN7	J	723	726	Right-handed 310
Helix 125	AN8	J	737	747	Right-handed alpha
Helix 126	AN9	J	752	754	Right-handed 310
Helix 127	AO1	J	768	805	Right-handed alpha
Helix 128	AO2	J	806	808	Right-handed 310
Helix 129	AO3	K	12	17	Right-handed alpha
Helix 130	AO4	K	19	26	Right-handed alpha
Helix 131	AO5	K	27	29	Right-handed 310
Helix 132	AO6	K	81	85	Right-handed 310
Helix 133	AO7	K	89	93	Right-handed 310
Helix 134	AO8	K	97	111	Right-handed alpha
Helix 135	AO9	K	131	134	Right-handed 310
Helix 136	AP1	K	135	143	Right-handed alpha
Helix 137	AP2	K	153	168	Right-handed alpha
Helix 138	AP3	K	181	199	Right-handed alpha
Helix 139	AP4	K	215	231	Right-handed alpha
Helix 140	AP5	K	270	274	Right-handed 310
Helix 141	AP6	K	284	291	Right-handed alpha
Helix 142	AP7	K	294	302	Right-handed alpha
Helix 143	AP8	K	324	339	Right-handed alpha
Helix 144	AP9	K	342	361	Right-handed alpha
Helix 145	AQ1	K	378	389	Right-handed alpha
Helix 146	AQ2	K	391	401	Right-handed alpha
Helix 147	AQ3	K	416	448	Right-handed alpha
Helix 148	AQ4	K	472	504	Right-handed alpha
Helix 149	AQ5	K	517	526	Right-handed alpha
Helix 150	AQ6	K	529	539	Right-handed alpha
Helix 151	AQ7	K	544	557	Right-handed alpha
Helix 152	AQ8	K	593	597	Right-handed 310
Helix 153	AQ9	K	602	607	Right-handed alpha
Helix 154	AR1	K	608	612	Right-handed 310
Helix 155	AR2	K	614	621	Right-handed alpha
Helix 156	AR3	K	646	664	Right-handed alpha
Helix 157	AR4	K	685	697	Right-handed alpha
Helix 158	AR5	K	697	708	Right-handed alpha
Helix 159	AR6	K	715	723	Right-handed alpha
Helix 160	AR7	K	724	726	Right-handed 310
Helix 161	AR8	K	737	747	Right-handed alpha
Helix 162	AR9	K	769	805	Right-handed alpha
Helix 163	AS1	K	806	808	Right-handed 310
Helix 164	AS2	L	48	62	Right-handed alpha
Helix 165	AS3	L	76	84	Right-handed alpha
Helix 166	AS4	L	91	98	Right-handed alpha
Helix 167	AS5	L	102	107	Right-handed alpha
Helix 168	AS6	L	111	124	Right-handed alpha
Helix 169	AS7	L	130	139	Right-handed alpha
Helix 170	AS8	L	150	160	Right-handed alpha
Helix 171	AS9	L	166	175	Right-handed alpha
Helix 172	AT1	L	186	194	Right-handed alpha
Helix 173	AT2	M	48	60	Right-handed alpha
Helix 174	AT3	M	61	63	Right-handed 310
Helix 175	AT4	M	75	83	Right-handed alpha
Helix 176	AT5	M	103	107	Right-handed 310
Helix 177	AT6	M	111	120	Right-handed alpha
Helix 178	AT7	M	130	140	Right-handed alpha
Helix 179	AT8	M	151	161	Right-handed alpha
Helix 180	AT9	M	166	175	Right-handed alpha
Helix 181	AU1	M	176	178	Right-handed 310
Helix 182	AU2	M	186	194	Right-handed alpha

There are 37 sheets in PDB entry 9YK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	245	250	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	19	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	149	155	anti-parallel
Strand 4	B	297	299	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	245	250	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	245	250	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	105	parallel
Strand 5	D	131	134	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	149	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	68	72	first strand
Strand 2	J	58	63	anti-parallel
Strand 3	J	47	54	anti-parallel
Strand 4	J	36	39	anti-parallel
Strand 5	J	77	78	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	118	first strand
Strand 2	J	121	125	anti-parallel
Strand 3	J	665	673	parallel
Strand 4	J	171	177	parallel
Strand 5	J	455	461	parallel
Strand 6	J	245	252	anti-parallel
Strand 7	J	258	266	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	232	233	first strand
Strand 2	J	241	242	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	363	366	first strand
Strand 2	J	373	376	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	403	406	first strand
Strand 2	J	409	412	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	577	581	first strand
Strand 2	J	584	588	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	711	714	first strand
Strand 2	J	762	765	anti-parallel
Strand 3	J	756	758	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	67	71	first strand
Strand 2	K	59	63	anti-parallel
Strand 3	K	47	53	anti-parallel
Strand 4	K	36	39	anti-parallel
Strand 5	K	77	78	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	115	118	first strand
Strand 2	K	121	125	anti-parallel
Strand 3	K	666	673	parallel
Strand 4	K	172	177	parallel
Strand 5	K	455	461	parallel
Strand 6	K	245	252	anti-parallel
Strand 7	K	258	266	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	233	first strand
Strand 2	K	241	242	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	364	366	first strand
Strand 2	K	373	375	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	403	406	first strand
Strand 2	K	409	412	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	563	564	first strand
Strand 2	K	577	581	anti-parallel
Strand 3	K	584	588	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	711	714	first strand
Strand 2	K	762	765	anti-parallel
Strand 3	K	756	758	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	149	first strand
Strand 2	L	184	185	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	72	73	first strand
Strand 2	M	109	110	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	148	150	first strand
Strand 2	M	183	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YK9