Analysis of interatomic Contacts of Structural Units in PDB entry:
9YMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YMB entry

There are 3 chains in PDB entry 9YMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 U 1 C 8
C
 U 16 U 25
A
 ALA 22ALA 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9YMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 82Right-handed alpha
Helix 2
AA2
A
140 148Right-handed alpha
Helix 3
AA3
A
155 174Right-handed alpha
Helix 4
AA4
A
371 387Right-handed alpha
Helix 5
AA5
A
391 396Right-handed alpha
Helix 6
AA6
A
458 462Right-handed 310
Helix 7
AA7
A
463 481Right-handed alpha
Helix 8
AA8
A
497 499Right-handed 310
Helix 9
AA9
A
500 512Right-handed alpha
Helix 10
AB1
A
526 539Right-handed alpha
Helix 11
AB2
A
549 554Right-handed alpha
Helix 12
AB3
A
556 572Right-handed alpha
Helix 13
AB4
A
584 589Right-handed 310
Helix 14
AB5
A
641 658Right-handed alpha
Helix 15
AB6
A
672 674Right-handed 310
Helix 16
AB7
A
675 695Right-handed alpha
Helix 17
AB8
A
719 723Right-handed 310
Helix 18
AB9
A
775 787Right-handed alpha
Helix 19
AC1
A
800 817Right-handed alpha
Helix 20
AC2
A
836 847Right-handed alpha
Helix 21
AC3
A
850 855Right-handed 310
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There are 6 sheets in PDB entry 9YMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 632first strand
Strand 2
A
610 617anti-parallel
Strand 3
A
591 599anti-parallel
Strand 4
A
663 669parallel
Strand 5
A
701 708parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
747 751anti-parallel
Strand 8
A
734 736anti-parallel
Strand 9
A
406 412anti-parallel
Strand 10
A
36 42anti-parallel
Strand 11
A
715 717anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
214 218anti-parallel
Strand 3
A
203 207anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
125 139anti-parallel
Strand 5
A
113 120anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 182anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
451 455parallel
Strand 3
A
517 522parallel
Strand 4
A
543 548parallel
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