Analysis of interatomic Contacts of Structural Units in PDB entry:
9YMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YMC entry

There are 3 chains in PDB entry 9YMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 19 A 26
A
 PRO 25ALA 859
B
 U 1 G 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9YMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 83Right-handed alpha
Helix 2
AA2
A
140 149Right-handed alpha
Helix 3
AA3
A
155 172Right-handed alpha
Helix 4
AA4
A
229 238Right-handed alpha
Helix 5
AA5
A
253 263Right-handed alpha
Helix 6
AA6
A
359 369Right-handed alpha
Helix 7
AA7
A
371 385Right-handed alpha
Helix 8
AA8
A
391 398Right-handed alpha
Helix 9
AA9
A
463 482Right-handed alpha
Helix 10
AB1
A
500 512Right-handed alpha
Helix 11
AB2
A
526 538Right-handed alpha
Helix 12
AB3
A
549 554Right-handed alpha
Helix 13
AB4
A
556 571Right-handed alpha
Helix 14
AB5
A
584 589Right-handed 310
Helix 15
AB6
A
601 605Right-handed 310
Helix 16
AB7
A
641 658Right-handed alpha
Helix 17
AB8
A
672 674Right-handed 310
Helix 18
AB9
A
675 695Right-handed alpha
Helix 19
AC1
A
775 789Right-handed alpha
Helix 20
AC2
A
800 817Right-handed alpha
Helix 21
AC3
A
839 843Right-handed alpha
Helix 22
AC4
A
844 846Right-handed 310
Helix 23
AC5
A
849 854Right-handed alpha
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There are 10 sheets in PDB entry 9YMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
411 412anti-parallel
Strand 3
A
734 736anti-parallel
Strand 4
A
749 751anti-parallel
Strand 5
A
763 770anti-parallel
Strand 6
A
701 708anti-parallel
Strand 7
A
663 668parallel
Strand 8
A
592 595parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
715 717anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
400 401anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
128 139anti-parallel
Strand 5
A
113 117anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 182anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
345 346anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
328 330anti-parallel
Strand 3
A
337 339anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
517 522parallel
Strand 3
A
544 548parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 599first strand
Strand 2
A
610 617anti-parallel
Strand 3
A
625 632anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il