Analysis of interatomic Contacts of Structural Units in PDB entry:
9YMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YMG entry

There are 3 chains in PDB entry 9YMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 436
B	MET 1	ASP 431
C	HIS 11	GLY 486

There are137 helices in PDB entry 9YMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	83	87	Right-handed 310
Helix 5	AA5	A	88	90	Right-handed 310
Helix 6	AA6	A	102	108	Right-handed alpha
Helix 7	AA7	A	110	113	Right-handed 310
Helix 8	AA8	A	114	127	Right-handed alpha
Helix 9	AA9	A	143	161	Right-handed alpha
Helix 10	AB1	A	182	195	Right-handed alpha
Helix 11	AB2	A	196	198	Right-handed 310
Helix 12	AB3	A	206	217	Right-handed alpha
Helix 13	AB4	A	223	244	Right-handed alpha
Helix 14	AB5	A	251	260	Right-handed alpha
Helix 15	AB6	A	277	281	Right-handed 310
Helix 16	AB7	A	287	294	Right-handed alpha
Helix 17	AB8	A	295	296	Right-handed 310
Helix 18	AB9	A	297	301	Right-handed 310
Helix 19	AC1	A	306	310	Right-handed 310
Helix 20	AC2	A	324	336	Right-handed alpha
Helix 21	AC3	A	337	339	Right-handed 310
Helix 22	AC4	A	384	400	Right-handed alpha
Helix 23	AC5	A	404	410	Right-handed alpha
Helix 24	AC6	A	415	436	Right-handed alpha
Helix 25	AC7	B	10	28	Right-handed alpha
Helix 26	AC8	B	40	44	Right-handed 310
Helix 27	AC9	B	46	49	Right-handed 310
Helix 28	AD1	B	70	78	Right-handed alpha
Helix 29	AD2	B	81	85	Right-handed 310
Helix 30	AD3	B	86	88	Right-handed 310
Helix 31	AD4	B	100	107	Right-handed alpha
Helix 32	AD5	B	112	126	Right-handed alpha
Helix 33	AD6	B	142	159	Right-handed alpha
Helix 34	AD7	B	172	176	Right-handed 310
Helix 35	AD8	B	180	196	Right-handed alpha
Helix 36	AD9	B	204	214	Right-handed alpha
Helix 37	AE1	B	221	237	Right-handed alpha
Helix 38	AE2	B	237	242	Right-handed alpha
Helix 39	AE3	B	249	258	Right-handed alpha
Helix 40	AE4	B	285	294	Right-handed alpha
Helix 41	AE5	B	295	299	Right-handed 310
Helix 42	AE6	B	304	308	Right-handed 310
Helix 43	AE7	B	322	337	Right-handed alpha
Helix 44	AE8	B	338	341	Right-handed 310
Helix 45	AE9	B	374	392	Right-handed alpha
Helix 46	AF1	B	394	400	Right-handed alpha
Helix 47	AF2	B	405	428	Right-handed alpha
Helix 48	AF3	C	22	29	Right-handed alpha
Helix 49	AF4	C	85	92	Right-handed alpha
Helix 50	AF5	C	93	96	Right-handed 310
Helix 51	AF6	C	97	103	Right-handed alpha
Helix 52	AF7	C	118	125	Right-handed alpha
Helix 53	AF8	C	131	147	Right-handed alpha
Helix 54	AF9	C	199	214	Right-handed alpha
Helix 55	AG1	C	272	296	Right-handed alpha
Helix 56	AG2	C	306	309	Right-handed 310
Helix 57	AG3	C	310	316	Right-handed alpha
Helix 58	AG4	C	317	320	Right-handed 310
Helix 59	AG5	C	338	353	Right-handed alpha
Helix 60	AG6	C	395	408	Right-handed alpha
Helix 61	AG7	C	409	419	Right-handed alpha
Helix 62	AG8	C	432	440	Right-handed alpha
Helix 63	AG9	C	442	451	Right-handed alpha
Helix 64	AH1	C	465	474	Right-handed alpha
Helix 65	AH2	C	475	485	Right-handed alpha
Helix 66	AH3	C	498	506	Right-handed alpha
Helix 67	AH4	C	508	518	Right-handed alpha
Helix 68	AH5	C	531	538	Right-handed alpha
Helix 69	AH6	C	541	548	Right-handed alpha
Helix 70	AH7	D	10	29	Right-handed alpha
Helix 71	AH8	D	47	51	Right-handed 310
Helix 72	AH9	D	72	81	Right-handed alpha
Helix 73	AI1	D	83	87	Right-handed 310
Helix 74	AI2	D	88	90	Right-handed 310
Helix 75	AI3	D	102	108	Right-handed alpha
Helix 76	AI4	D	110	113	Right-handed 310
Helix 77	AI5	D	114	127	Right-handed alpha
Helix 78	AI6	D	143	161	Right-handed alpha
Helix 79	AI7	D	182	195	Right-handed alpha
Helix 80	AI8	D	196	198	Right-handed 310
Helix 81	AI9	D	206	217	Right-handed alpha
Helix 82	AJ1	D	223	244	Right-handed alpha
Helix 83	AJ2	D	251	260	Right-handed alpha
Helix 84	AJ3	D	277	281	Right-handed 310
Helix 85	AJ4	D	287	294	Right-handed alpha
Helix 86	AJ5	D	295	296	Right-handed 310
Helix 87	AJ6	D	297	301	Right-handed 310
Helix 88	AJ7	D	306	310	Right-handed 310
Helix 89	AJ8	D	324	337	Right-handed alpha
Helix 90	AJ9	D	384	400	Right-handed alpha
Helix 91	AK1	D	404	410	Right-handed alpha
Helix 92	AK2	D	415	436	Right-handed alpha
Helix 93	AK3	E	10	28	Right-handed alpha
Helix 94	AK4	E	40	44	Right-handed 310
Helix 95	AK5	E	46	49	Right-handed 310
Helix 96	AK6	E	70	78	Right-handed alpha
Helix 97	AK7	E	81	85	Right-handed 310
Helix 98	AK8	E	86	88	Right-handed 310
Helix 99	AK9	E	100	106	Right-handed alpha
Helix 100	AL1	E	106	111	Right-handed alpha
Helix 101	AL2	E	112	126	Right-handed alpha
Helix 102	AL3	E	142	159	Right-handed alpha
Helix 103	AL4	E	180	196	Right-handed alpha
Helix 104	AL5	E	204	214	Right-handed alpha
Helix 105	AL6	E	221	237	Right-handed alpha
Helix 106	AL7	E	237	242	Right-handed alpha
Helix 107	AL8	E	249	258	Right-handed alpha
Helix 108	AL9	E	285	294	Right-handed alpha
Helix 109	AM1	E	295	299	Right-handed 310
Helix 110	AM2	E	304	308	Right-handed 310
Helix 111	AM3	E	322	337	Right-handed alpha
Helix 112	AM4	E	338	341	Right-handed 310
Helix 113	AM5	E	374	391	Right-handed alpha
Helix 114	AM6	E	394	400	Right-handed alpha
Helix 115	AM7	E	405	427	Right-handed alpha
Helix 116	AM8	F	22	29	Right-handed alpha
Helix 117	AM9	F	85	92	Right-handed alpha
Helix 118	AN1	F	93	96	Right-handed 310
Helix 119	AN2	F	97	103	Right-handed alpha
Helix 120	AN3	F	118	125	Right-handed alpha
Helix 121	AN4	F	131	147	Right-handed alpha
Helix 122	AN5	F	199	214	Right-handed alpha
Helix 123	AN6	F	272	296	Right-handed alpha
Helix 124	AN7	F	306	309	Right-handed 310
Helix 125	AN8	F	310	316	Right-handed alpha
Helix 126	AN9	F	317	320	Right-handed 310
Helix 127	AO1	F	338	353	Right-handed alpha
Helix 128	AO2	F	397	408	Right-handed alpha
Helix 129	AO3	F	409	419	Right-handed alpha
Helix 130	AO4	F	432	440	Right-handed alpha
Helix 131	AO5	F	442	451	Right-handed alpha
Helix 132	AO6	F	465	474	Right-handed alpha
Helix 133	AO7	F	475	485	Right-handed alpha
Helix 134	AO8	F	498	506	Right-handed alpha
Helix 135	AO9	F	508	518	Right-handed alpha
Helix 136	AP1	F	531	539	Right-handed alpha
Helix 137	AP2	F	541	548	Right-handed alpha

There are 16 sheets in PDB entry 9YMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	352	356	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	363	371	anti-parallel
Strand 9	B	310	319	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	13	18	parallel
Strand 3	C	325	332	parallel
Strand 4	C	107	112	parallel
Strand 5	C	250	258	parallel
Strand 6	C	229	240	anti-parallel
Strand 7	C	151	163	anti-parallel
Strand 8	C	166	169	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	41	43	anti-parallel
Strand 3	C	73	75	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	186	189	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	3	9	parallel
Strand 4	D	132	140	parallel
Strand 5	D	165	172	parallel
Strand 6	D	200	205	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	60	63	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	273	first strand
Strand 2	D	373	381	anti-parallel
Strand 3	D	312	321	anti-parallel
Strand 4	D	352	356	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	63	67	parallel
Strand 3	E	3	9	parallel
Strand 4	E	130	138	parallel
Strand 5	E	163	170	parallel
Strand 6	E	198	203	parallel
Strand 7	E	265	271	parallel
Strand 8	E	363	371	anti-parallel
Strand 9	E	310	319	anti-parallel
Strand 10	E	349	354	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	59	61	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	80	first strand
Strand 2	F	13	18	parallel
Strand 3	F	325	332	parallel
Strand 4	F	107	112	parallel
Strand 5	F	250	258	parallel
Strand 6	F	229	240	anti-parallel
Strand 7	F	151	163	anti-parallel
Strand 8	F	166	169	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	41	44	anti-parallel
Strand 3	F	72	75	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	182	first strand
Strand 2	F	186	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YMG