Analysis of interatomic Contacts of Structural Units in PDB entry:
9YMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YMU entry

There are 9 chains in PDB entry 9YMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	VAL 2	ASP 1341
J	GLU 16	ALA 1375
K	ALA 2	ALA 78
P	G 25	A 85
R	A 1	U 2
G	SER 4	ASP 236
H	SER 4	ASP 233
L	SER 89	LEU 611
Q	T 13	C 73

There are138 helices in PDB entry 9YMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	4	9	Right-handed alpha
Helix 2	AA2	I	28	40	Right-handed alpha
Helix 3	AA3	I	48	57	Right-handed alpha
Helix 4	AA4	I	81	89	Right-handed alpha
Helix 5	AA5	I	206	213	Right-handed alpha
Helix 6	AA6	I	216	225	Right-handed alpha
Helix 7	AA7	I	242	247	Right-handed 310
Helix 8	AA8	I	270	281	Right-handed alpha
Helix 9	AA9	I	288	293	Right-handed 310
Helix 10	AB1	I	318	327	Right-handed alpha
Helix 11	AB2	I	345	354	Right-handed alpha
Helix 12	AB3	I	358	371	Right-handed alpha
Helix 13	AB4	I	377	390	Right-handed alpha
Helix 14	AB5	I	397	409	Right-handed alpha
Helix 15	AB6	I	421	438	Right-handed alpha
Helix 16	AB7	I	455	481	Right-handed alpha
Helix 17	AB8	I	488	493	Right-handed alpha
Helix 18	AB9	I	495	509	Right-handed alpha
Helix 19	AC1	I	519	528	Right-handed alpha
Helix 20	AC2	I	539	543	Right-handed 310
Helix 21	AC3	I	551	555	Right-handed 310
Helix 22	AC4	I	608	612	Right-handed alpha
Helix 23	AC5	I	664	668	Right-handed 310
Helix 24	AC6	I	670	674	Right-handed 310
Helix 25	AC7	I	675	687	Right-handed alpha
Helix 26	AC8	I	704	713	Right-handed alpha
Helix 27	AC9	I	820	825	Right-handed alpha
Helix 28	AD1	I	859	863	Right-handed 310
Helix 29	AD2	I	896	907	Right-handed alpha
Helix 30	AD3	I	942	981	Right-handed alpha
Helix 31	AD4	I	987	992	Right-handed alpha
Helix 32	AD5	I	993	999	Right-handed 310
Helix 33	AD6	I	1005	1009	Right-handed 310
Helix 34	AD7	I	1010	1038	Right-handed alpha
Helix 35	AD8	I	1081	1085	Right-handed 310
Helix 36	AD9	I	1101	1107	Right-handed alpha
Helix 37	AE1	I	1109	1134	Right-handed alpha
Helix 38	AE2	I	1137	1151	Right-handed alpha
Helix 39	AE3	I	1160	1164	Right-handed 310
Helix 40	AE4	I	1167	1177	Right-handed alpha
Helix 41	AE5	I	1191	1202	Right-handed alpha
Helix 42	AE6	I	1238	1242	Right-handed 310
Helix 43	AE7	I	1271	1281	Right-handed alpha
Helix 44	AE8	I	1283	1292	Right-handed alpha
Helix 45	AE9	I	1297	1310	Right-handed alpha
Helix 46	AF1	I	1320	1333	Right-handed alpha
Helix 47	AF2	J	26	33	Right-handed alpha
Helix 48	AF3	J	58	63	Right-handed alpha
Helix 49	AF4	J	77	81	Right-handed 310
Helix 50	AF5	J	94	100	Right-handed 310
Helix 51	AF6	J	114	119	Right-handed alpha
Helix 52	AF7	J	122	129	Right-handed alpha
Helix 53	AF8	J	131	140	Right-handed alpha
Helix 54	AF9	J	161	173	Right-handed alpha
Helix 55	AG1	J	180	191	Right-handed alpha
Helix 56	AG2	J	193	207	Right-handed alpha
Helix 57	AG3	J	210	230	Right-handed alpha
Helix 58	AG4	J	233	236	Right-handed 310
Helix 59	AG5	J	246	250	Right-handed 310
Helix 60	AG6	J	264	286	Right-handed alpha
Helix 61	AG7	J	288	308	Right-handed alpha
Helix 62	AG8	J	326	332	Right-handed alpha
Helix 63	AG9	J	336	342	Right-handed alpha
Helix 64	AH1	J	370	377	Right-handed alpha
Helix 65	AH2	J	377	389	Right-handed alpha
Helix 66	AH3	J	393	404	Right-handed alpha
Helix 67	AH4	J	405	416	Right-handed alpha
Helix 68	AH5	J	430	432	Right-handed 310
Helix 69	AH6	J	453	458	Right-handed alpha
Helix 70	AH7	J	473	483	Right-handed alpha
Helix 71	AH8	J	485	489	Right-handed 310
Helix 72	AH9	J	504	514	Right-handed alpha
Helix 73	AI1	J	529	539	Right-handed alpha
Helix 74	AI2	J	574	580	Right-handed alpha
Helix 75	AI3	J	581	583	Right-handed 310
Helix 76	AI4	J	588	592	Right-handed 310
Helix 77	AI5	J	597	612	Right-handed alpha
Helix 78	AI6	J	613	636	Right-handed alpha
Helix 79	AI7	J	649	670	Right-handed alpha
Helix 80	AI8	J	674	702	Right-handed alpha
Helix 81	AI9	J	720	729	Right-handed alpha
Helix 82	AJ1	J	733	742	Right-handed alpha
Helix 83	AJ2	J	768	789	Right-handed alpha
Helix 84	AJ3	J	789	805	Right-handed alpha
Helix 85	AJ4	J	834	840	Right-handed alpha
Helix 86	AJ5	J	865	875	Right-handed alpha
Helix 87	AJ6	J	896	900	Right-handed alpha
Helix 88	AJ7	J	914	932	Right-handed alpha
Helix 89	AJ8	J	1069	1073	Right-handed 310
Helix 90	AJ9	J	1133	1146	Right-handed alpha
Helix 91	AK1	J	1216	1224	Right-handed alpha
Helix 92	AK2	J	1225	1244	Right-handed alpha
Helix 93	AK3	J	1249	1260	Right-handed alpha
Helix 94	AK4	J	1282	1295	Right-handed alpha
Helix 95	AK5	J	1308	1315	Right-handed alpha
Helix 96	AK6	J	1318	1326	Right-handed alpha
Helix 97	AK7	J	1327	1339	Right-handed alpha
Helix 98	AK8	J	1346	1353	Right-handed alpha
Helix 99	AK9	J	1359	1361	Right-handed 310
Helix 100	AL1	J	1362	1375	Right-handed alpha
Helix 101	AL2	K	6	14	Right-handed alpha
Helix 102	AL3	K	15	32	Right-handed alpha
Helix 103	AL4	K	45	57	Right-handed alpha
Helix 104	AL5	K	60	78	Right-handed alpha
Helix 105	AL6	G	34	48	Right-handed alpha
Helix 106	AL7	G	77	86	Right-handed alpha
Helix 107	AL8	G	113	115	Right-handed 310
Helix 108	AL9	G	154	158	Right-handed 310
Helix 109	AM1	G	212	228	Right-handed alpha
Helix 110	AM2	G	228	233	Right-handed alpha
Helix 111	AM3	H	34	50	Right-handed alpha
Helix 112	AM4	H	77	87	Right-handed alpha
Helix 113	AM5	H	113	115	Right-handed 310
Helix 114	AM6	H	212	227	Right-handed alpha
Helix 115	AM7	L	96	106	Right-handed alpha
Helix 116	AM8	L	112	134	Right-handed alpha
Helix 117	AM9	L	137	153	Right-handed alpha
Helix 118	AN1	L	215	234	Right-handed alpha
Helix 119	AN2	L	245	259	Right-handed alpha
Helix 120	AN3	L	262	296	Right-handed alpha
Helix 121	AN4	L	298	307	Right-handed alpha
Helix 122	AN5	L	313	320	Right-handed alpha
Helix 123	AN6	L	324	330	Right-handed alpha
Helix 124	AN7	L	333	352	Right-handed alpha
Helix 125	AN8	L	354	383	Right-handed alpha
Helix 126	AN9	L	383	393	Right-handed alpha
Helix 127	AO1	L	400	418	Right-handed alpha
Helix 128	AO2	L	420	424	Right-handed 310
Helix 129	AO3	L	426	447	Right-handed alpha
Helix 130	AO4	L	453	475	Right-handed alpha
Helix 131	AO5	L	479	488	Right-handed alpha
Helix 132	AO6	L	490	498	Right-handed alpha
Helix 133	AO7	L	518	523	Right-handed 310
Helix 134	AO8	L	530	549	Right-handed alpha
Helix 135	AO9	L	552	564	Right-handed alpha
Helix 136	AP1	L	572	580	Right-handed alpha
Helix 137	AP2	L	583	599	Right-handed alpha
Helix 138	AP3	L	604	611	Right-handed alpha

There are 48 sheets in PDB entry 9YMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	66	75	anti-parallel
Strand 3	I	93	105	anti-parallel
Strand 4	I	114	128	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	138	first strand
Strand 2	I	141	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	529	531	parallel
Strand 4	I	572	574	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	198	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	284	287	first strand
Strand 2	I	236	240	anti-parallel
Strand 3	I	227	233	anti-parallel
Strand 4	I	332	336	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	257	first strand
Strand 2	I	260	263	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	303	first strand
Strand 2	I	308	311	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	598	607	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	652	653	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	633	637	anti-parallel
Strand 6	I	642	646	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	716	717	first strand
Strand 2	I	782	785	anti-parallel
Strand 3	I	768	769	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	748	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	789	790	first strand
Strand 2	I	793	794	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1209	1210	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1065	1067	anti-parallel
Strand 4	I	1073	1080	anti-parallel
Strand 5	I	815	819	parallel
Strand 6	I	1096	1098	anti-parallel
Strand 7	I	798	804	parallel
Strand 8	I	1225	1234	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	841	first strand
Strand 2	I	1046	1058	anti-parallel
Strand 3	I	926	935	anti-parallel
Strand 4	I	876	877	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	887	889	first strand
Strand 2	I	913	915	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	357	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel
Strand 7	J	447	449	anti-parallel
Strand 8	J	350	357	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1268	1270	first strand
Strand 2	J	345	347	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	37	first strand
Strand 2	J	102	112	parallel
Strand 3	J	238	244	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	160	first strand
Strand 2	J	144	148	anti-parallel
Strand 3	J	177	179	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	252	254	first strand
Strand 2	J	260	262	anti-parallel
Strand 3	L	505	506	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	557	parallel
Strand 3	J	563	573	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	703	707	first strand
Strand 2	J	713	717	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	745	748	first strand
Strand 2	J	754	759	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	809	811	first strand
Strand 2	J	894	895	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	825	827	first strand
Strand 2	J	830	833	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	848	849	first strand
Strand 2	J	856	858	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	952	first strand
Strand 2	J	1015	1019	anti-parallel
Strand 3	J	1002	1003	anti-parallel
Strand 4	J	973	975	anti-parallel
Strand 5	J	965	967	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	991	997	first strand
Strand 2	J	980	985	anti-parallel
Strand 3	J	956	961	anti-parallel
Strand 4	J	1010	1011	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1024	1028	first strand
Strand 2	J	1120	1125	anti-parallel
Strand 3	J	1106	1107	anti-parallel
Strand 4	J	1057	1061	anti-parallel
Strand 5	J	1046	1050	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1077	1081	first strand
Strand 2	J	1033	1038	anti-parallel
Strand 3	J	1114	1115	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1155	1156	first strand
Strand 2	J	1209	1211	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1186	1191	first strand
Strand 2	J	1172	1178	anti-parallel
Strand 3	J	1161	1165	anti-parallel
Strand 4	J	1203	1204	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1305	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	18	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	139	150	anti-parallel
Strand 3	G	52	61	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	92	first strand
Strand 2	G	121	123	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	175	176	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	18	first strand
Strand 2	H	23	31	anti-parallel
Strand 3	H	195	207	anti-parallel
Strand 4	H	180	192	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	105	first strand
Strand 2	H	139	150	anti-parallel
Strand 3	H	52	60	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	121	123	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	111	first strand
Strand 2	H	129	133	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YMU