Analysis of interatomic Contacts of Structural Units in PDB entry:
9YNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YNK entry

There are 4 chains in PDB entry 9YNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 8VAL 2635
B
ILE 610VAL 2635
C
MET 1742VAL 2635
D
ALA 2143VAL 2635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are269 helices in PDB entry 9YNK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
156 159Right-handed 310
Helix 3
AA3
A
271 275Right-handed 310
Helix 4
AA4
A
277 279Right-handed 310
Helix 5
AA5
A
435 462Right-handed alpha
Helix 6
AA6
A
465 485Right-handed alpha
Helix 7
AA7
A
502 512Right-handed alpha
Helix 8
AA8
A
513 524Right-handed alpha
Helix 9
AA9
A
525 527Right-handed 310
Helix 10
AB1
A
546 565Right-handed alpha
Helix 11
AB2
A
567 576Right-handed alpha
Helix 12
AB3
A
577 585Right-handed alpha
Helix 13
AB4
A
590 599Right-handed alpha
Helix 14
AB5
A
602 610Right-handed alpha
Helix 15
AB6
A
611 626Right-handed alpha
Helix 16
AB7
A
627 638Right-handed alpha
Helix 17
AB8
A
645 657Right-handed alpha
Helix 18
AB9
A
660 665Right-handed 310
Helix 19
AC1
A
709 719Right-handed alpha
Helix 20
AC2
A
720 741Right-handed alpha
Helix 21
AC3
A
748 753Right-handed alpha
Helix 22
AC4
A
757 767Right-handed alpha
Helix 23
AC5
A
771 786Right-handed alpha
Helix 24
AC6
A
803 807Right-handed 310
Helix 25
AC7
A
812 820Right-handed alpha
Helix 26
AC8
A
820 829Right-handed alpha
Helix 27
AC9
A
832 848Right-handed alpha
Helix 28
AD1
A
856 875Right-handed alpha
Helix 29
AD2
A
878 894Right-handed alpha
Helix 30
AD3
A
964 1000Right-handed alpha
Helix 31
AD4
A
1027 1036Right-handed alpha
Helix 32
AD5
A
1054 1067Right-handed alpha
Helix 33
AD6
A
1069 1084Right-handed alpha
Helix 34
AD7
A
1085 1097Right-handed alpha
Helix 35
AD8
A
1104 1125Right-handed alpha
Helix 36
AD9
A
1174 1194Right-handed alpha
Helix 37
AE1
A
1196 1211Right-handed alpha
Helix 38
AE2
A
1211 1222Right-handed alpha
Helix 39
AE3
A
1229 1246Right-handed alpha
Helix 40
AE4
A
1249 1258Right-handed alpha
Helix 41
AE5
A
1259 1264Right-handed alpha
Helix 42
AE6
A
1267 1279Right-handed alpha
Helix 43
AE7
A
1281 1286Right-handed alpha
Helix 44
AE8
A
1289 1303Right-handed alpha
Helix 45
AE9
A
1306 1316Right-handed alpha
Helix 46
AF1
A
1324 1343Right-handed alpha
Helix 47
AF2
A
1351 1361Right-handed alpha
Helix 48
AF3
A
1370 1387Right-handed alpha
Helix 49
AF4
A
1390 1401Right-handed alpha
Helix 50
AF5
A
1402 1412Right-handed alpha
Helix 51
AF6
A
1416 1431Right-handed alpha
Helix 52
AF7
A
1446 1461Right-handed alpha
Helix 53
AF8
A
1475 1493Right-handed alpha
Helix 54
AF9
A
1494 1497Right-handed 310
Helix 55
AG1
A
1505 1520Right-handed alpha
Helix 56
AG2
A
1526 1544Right-handed alpha
Helix 57
AG3
A
1599 1634Right-handed alpha
Helix 58
AG4
A
1635 1638Right-handed 310
Helix 59
AG5
A
1643 1649Right-handed alpha
Helix 60
AG6
A
1651 1664Right-handed alpha
Helix 61
AG7
A
1667 1684Right-handed alpha
Helix 62
AG8
A
1689 1705Right-handed alpha
Helix 63
AG9
A
1741 1753Right-handed alpha
Helix 64
AH1
A
1753 1765Right-handed alpha
Helix 65
AH2
A
1767 1783Right-handed alpha
Helix 66
AH3
A
1786 1799Right-handed alpha
Helix 67
AH4
A
1802 1824Right-handed alpha
Helix 68
AH5
A
1912 1917Right-handed alpha
Helix 69
AH6
A
1917 1929Right-handed alpha
Helix 70
AH7
A
1930 1932Right-handed 310
Helix 71
AH8
A
1933 1940Right-handed alpha
Helix 72
AH9
A
1950 1964Right-handed alpha
Helix 73
AI1
A
1964 1970Right-handed alpha
Helix 74
AI2
A
1972 1976Right-handed 310
Helix 75
AI3
A
1981 1997Right-handed alpha
Helix 76
AI4
A
2002 2009Right-handed alpha
Helix 77
AI5
A
2013 2024Right-handed alpha
Helix 78
AI6
A
2026 2033Right-handed alpha
Helix 79
AI7
A
2033 2052Right-handed alpha
Helix 80
AI8
A
2058 2066Right-handed alpha
Helix 81
AI9
A
2069 2087Right-handed alpha
Helix 82
AJ1
A
2100 2116Right-handed alpha
Helix 83
AJ2
A
2119 2126Right-handed alpha
Helix 84
AJ3
A
2137 2145Right-handed alpha
Helix 85
AJ4
A
2166 2172Right-handed 310
Helix 86
AJ5
A
2173 2184Right-handed alpha
Helix 87
AJ6
A
2192 2214Right-handed alpha
Helix 88
AJ7
A
2218 2225Right-handed alpha
Helix 89
AJ8
A
2226 2248Right-handed alpha
Helix 90
AJ9
A
2288 2302Right-handed alpha
Helix 91
AK1
A
2305 2331Right-handed alpha
Helix 92
AK2
A
2332 2335Right-handed 310
Helix 93
AK3
A
2336 2343Right-handed alpha
Helix 94
AK4
A
2343 2362Right-handed alpha
Helix 95
AK5
A
2363 2371Right-handed 310
Helix 96
AK6
A
2372 2378Right-handed alpha
Helix 97
AK7
A
2378 2390Right-handed alpha
Helix 98
AK8
A
2391 2416Right-handed alpha
Helix 99
AK9
A
2417 2420Right-handed 310
Helix 100
AL1
A
2481 2496Right-handed alpha
Helix 101
AL2
A
2499 2503Right-handed 310
Helix 102
AL3
A
2513 2528Right-handed alpha
Helix 103
AL4
A
2531 2560Right-handed alpha
Helix 104
AL5
A
2568 2573Right-handed 310
Helix 105
AL6
A
2578 2586Right-handed alpha
Helix 106
AL7
A
2588 2602Right-handed alpha
Helix 107
AL8
A
2603 2607Right-handed 310
Helix 108
AL9
A
2608 2621Right-handed alpha
Helix 109
AM1
A
2631 2635Right-handed 310
Helix 110
AM2
B
611 626Right-handed alpha
Helix 111
AM3
B
627 638Right-handed alpha
Helix 112
AM4
B
645 657Right-handed alpha
Helix 113
AM5
B
661 665Right-handed 310
Helix 114
AM6
B
709 719Right-handed alpha
Helix 115
AM7
B
720 741Right-handed alpha
Helix 116
AM8
B
748 756Right-handed alpha
Helix 117
AM9
B
757 767Right-handed alpha
Helix 118
AN1
B
771 786Right-handed alpha
Helix 119
AN2
B
812 820Right-handed alpha
Helix 120
AN3
B
820 829Right-handed alpha
Helix 121
AN4
B
832 847Right-handed alpha
Helix 122
AN5
B
856 875Right-handed alpha
Helix 123
AN6
B
878 894Right-handed alpha
Helix 124
AN7
B
964 1000Right-handed alpha
Helix 125
AN8
B
1027 1036Right-handed alpha
Helix 126
AN9
B
1054 1067Right-handed alpha
Helix 127
AO1
B
1069 1085Right-handed alpha
Helix 128
AO2
B
1085 1097Right-handed alpha
Helix 129
AO3
B
1102 1125Right-handed alpha
Helix 130
AO4
B
1125 1130Right-handed alpha
Helix 131
AO5
B
1174 1194Right-handed alpha
Helix 132
AO6
B
1196 1211Right-handed alpha
Helix 133
AO7
B
1211 1222Right-handed alpha
Helix 134
AO8
B
1229 1246Right-handed alpha
Helix 135
AO9
B
1249 1258Right-handed alpha
Helix 136
AP1
B
1259 1264Right-handed 310
Helix 137
AP2
B
1267 1279Right-handed alpha
Helix 138
AP3
B
1281 1287Right-handed alpha
Helix 139
AP4
B
1289 1303Right-handed alpha
Helix 140
AP5
B
1306 1316Right-handed alpha
Helix 141
AP6
B
1324 1338Right-handed alpha
Helix 142
AP7
B
1351 1359Right-handed alpha
Helix 143
AP8
B
1372 1387Right-handed alpha
Helix 144
AP9
B
1390 1401Right-handed alpha
Helix 145
AQ1
B
1402 1412Right-handed alpha
Helix 146
AQ2
B
1416 1431Right-handed alpha
Helix 147
AQ3
B
1447 1461Right-handed alpha
Helix 148
AQ4
B
1475 1493Right-handed alpha
Helix 149
AQ5
B
1506 1520Right-handed alpha
Helix 150
AQ6
B
1526 1542Right-handed alpha
Helix 151
AQ7
B
1599 1634Right-handed alpha
Helix 152
AQ8
B
1635 1638Right-handed 310
Helix 153
AQ9
B
1643 1649Right-handed alpha
Helix 154
AR1
B
1651 1664Right-handed alpha
Helix 155
AR2
B
1667 1684Right-handed alpha
Helix 156
AR3
B
1689 1705Right-handed alpha
Helix 157
AR4
B
1741 1753Right-handed alpha
Helix 158
AR5
B
1753 1765Right-handed alpha
Helix 159
AR6
B
1767 1783Right-handed alpha
Helix 160
AR7
B
1786 1799Right-handed alpha
Helix 161
AR8
B
1802 1824Right-handed alpha
Helix 162
AR9
B
1912 1917Right-handed alpha
Helix 163
AS1
B
1917 1930Right-handed alpha
Helix 164
AS2
B
1933 1943Right-handed alpha
Helix 165
AS3
B
1950 1964Right-handed alpha
Helix 166
AS4
B
1964 1969Right-handed alpha
Helix 167
AS5
B
1972 1977Right-handed alpha
Helix 168
AS6
B
1981 1997Right-handed alpha
Helix 169
AS7
B
2002 2009Right-handed alpha
Helix 170
AS8
B
2013 2024Right-handed alpha
Helix 171
AS9
B
2026 2031Right-handed alpha
Helix 172
AT1
B
2033 2052Right-handed alpha
Helix 173
AT2
B
2058 2066Right-handed alpha
Helix 174
AT3
B
2069 2087Right-handed alpha
Helix 175
AT4
B
2100 2117Right-handed alpha
Helix 176
AT5
B
2119 2126Right-handed alpha
Helix 177
AT6
B
2137 2145Right-handed alpha
Helix 178
AT7
B
2166 2172Right-handed 310
Helix 179
AT8
B
2173 2184Right-handed alpha
Helix 180
AT9
B
2192 2216Right-handed alpha
Helix 181
AU1
B
2216 2225Right-handed alpha
Helix 182
AU2
B
2226 2248Right-handed alpha
Helix 183
AU3
B
2288 2302Right-handed alpha
Helix 184
AU4
B
2305 2331Right-handed alpha
Helix 185
AU5
B
2336 2343Right-handed alpha
Helix 186
AU6
B
2343 2362Right-handed alpha
Helix 187
AU7
B
2363 2371Right-handed 310
Helix 188
AU8
B
2372 2378Right-handed alpha
Helix 189
AU9
B
2378 2390Right-handed alpha
Helix 190
AV1
B
2391 2416Right-handed alpha
Helix 191
AV2
B
2417 2420Right-handed 310
Helix 192
AV3
B
2481 2496Right-handed alpha
Helix 193
AV4
B
2498 2503Right-handed 310
Helix 194
AV5
B
2513 2529Right-handed alpha
Helix 195
AV6
B
2531 2561Right-handed alpha
Helix 196
AV7
B
2568 2573Right-handed 310
Helix 197
AV8
B
2578 2586Right-handed alpha
Helix 198
AV9
B
2588 2602Right-handed alpha
Helix 199
AW1
B
2603 2607Right-handed 310
Helix 200
AW2
B
2608 2621Right-handed alpha
Helix 201
AW3
C
1743 1753Right-handed alpha
Helix 202
AW4
C
1753 1765Right-handed alpha
Helix 203
AW5
C
1767 1782Right-handed alpha
Helix 204
AW6
C
1786 1799Right-handed alpha
Helix 205
AW7
C
1802 1824Right-handed alpha
Helix 206
AW8
C
1912 1929Right-handed alpha
Helix 207
AW9
C
1933 1940Right-handed alpha
Helix 208
AX1
C
1950 1964Right-handed alpha
Helix 209
AX2
C
1964 1970Right-handed alpha
Helix 210
AX3
C
1972 1976Right-handed 310
Helix 211
AX4
C
1981 1997Right-handed alpha
Helix 212
AX5
C
2002 2009Right-handed alpha
Helix 213
AX6
C
2013 2024Right-handed alpha
Helix 214
AX7
C
2026 2031Right-handed alpha
Helix 215
AX8
C
2033 2053Right-handed alpha
Helix 216
AX9
C
2058 2066Right-handed alpha
Helix 217
AY1
C
2069 2087Right-handed alpha
Helix 218
AY2
C
2100 2116Right-handed alpha
Helix 219
AY3
C
2119 2126Right-handed alpha
Helix 220
AY4
C
2137 2145Right-handed alpha
Helix 221
AY5
C
2166 2172Right-handed 310
Helix 222
AY6
C
2173 2184Right-handed alpha
Helix 223
AY7
C
2192 2214Right-handed alpha
Helix 224
AY8
C
2216 2225Right-handed alpha
Helix 225
AY9
C
2226 2248Right-handed alpha
Helix 226
AZ1
C
2288 2302Right-handed alpha
Helix 227
AZ2
C
2305 2331Right-handed alpha
Helix 228
AZ3
C
2332 2335Right-handed 310
Helix 229
AZ4
C
2336 2343Right-handed alpha
Helix 230
AZ5
C
2343 2362Right-handed alpha
Helix 231
AZ6
C
2363 2371Right-handed 310
Helix 232
AZ7
C
2372 2378Right-handed alpha
Helix 233
AZ8
C
2379 2390Right-handed alpha
Helix 234
AZ9
C
2391 2416Right-handed alpha
Helix 235
BA1
C
2417 2420Right-handed 310
Helix 236
BA2
C
2481 2496Right-handed alpha
Helix 237
BA3
C
2499 2503Right-handed 310
Helix 238
BA4
C
2513 2528Right-handed alpha
Helix 239
BA5
C
2531 2560Right-handed alpha
Helix 240
BA6
C
2568 2572Right-handed 310
Helix 241
BA7
C
2578 2583Right-handed alpha
Helix 242
BA8
C
2588 2602Right-handed alpha
Helix 243
BA9
C
2603 2607Right-handed 310
Helix 244
BB1
C
2608 2621Right-handed alpha
Helix 245
BB2
D
2166 2171Right-handed 310
Helix 246
BB3
D
2173 2184Right-handed alpha
Helix 247
BB4
D
2192 2214Right-handed alpha
Helix 248
BB5
D
2216 2225Right-handed alpha
Helix 249
BB6
D
2225 2248Right-handed alpha
Helix 250
BB7
D
2288 2302Right-handed alpha
Helix 251
BB8
D
2305 2331Right-handed alpha
Helix 252
BB9
D
2332 2335Right-handed 310
Helix 253
BC1
D
2336 2343Right-handed alpha
Helix 254
BC2
D
2343 2362Right-handed alpha
Helix 255
BC3
D
2363 2371Right-handed 310
Helix 256
BC4
D
2372 2378Right-handed alpha
Helix 257
BC5
D
2378 2390Right-handed alpha
Helix 258
BC6
D
2391 2416Right-handed alpha
Helix 259
BC7
D
2417 2420Right-handed 310
Helix 260
BC8
D
2481 2496Right-handed alpha
Helix 261
BC9
D
2499 2504Right-handed alpha
Helix 262
BD1
D
2513 2528Right-handed alpha
Helix 263
BD2
D
2531 2560Right-handed alpha
Helix 264
BD3
D
2568 2573Right-handed 310
Helix 265
BD4
D
2578 2585Right-handed alpha
Helix 266
BD5
D
2588 2602Right-handed alpha
Helix 267
BD6
D
2603 2607Right-handed 310
Helix 268
BD7
D
2608 2620Right-handed alpha
Helix 269
BD8
D
2631 2635Right-handed 310
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There are 20 sheets in PDB entry 9YNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 151first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
122 125anti-parallel
Strand 4
A
58 61anti-parallel
Strand 5
A
14 20anti-parallel
Strand 6
A
217 224anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 164first strand
Strand 2
A
183 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
193 195first strand
Strand 2
A
209 211anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
303 307first strand
Strand 2
A
281 286anti-parallel
Strand 3
A
239 241anti-parallel
Strand 4
A
432 433anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
250 256first strand
Strand 2
A
259 265anti-parallel
Strand 3
A
414 420anti-parallel
Strand 4
A
396 400anti-parallel
Strand 5
A
386 391anti-parallel
Strand 6
A
367 371anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
313 318first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
414 420anti-parallel
Strand 4
A
396 400anti-parallel
Strand 5
A
386 391anti-parallel
Strand 6
A
429 430anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
639 640first strand
Strand 2
A
643 644anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
667 671first strand
Strand 2
A
692 698anti-parallel
Strand 3
A
704 708anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1318 1319first strand
Strand 2
A
1322 1323anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2146 2152first strand
Strand 2
A
2158 2164anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2422 2427first strand
Strand 2
A
2472 2477anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
639 640first strand
Strand 2
B
643 644anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
667 671first strand
Strand 2
B
692 698anti-parallel
Strand 3
B
704 708anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1318 1319first strand
Strand 2
B
1322 1323anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2146 2152first strand
Strand 2
B
2158 2164anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2422 2427first strand
Strand 2
B
2472 2477anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2146 2152first strand
Strand 2
C
2158 2164anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2422 2427first strand
Strand 2
C
2472 2477anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2146 2152first strand
Strand 2
D
2158 2164anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2422 2427first strand
Strand 2
D
2472 2477anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il