Analysis of interatomic Contacts of Structural Units in PDB entry:
9YNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YNP entry

There are 9 chains in PDB entry 9YNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	ARG 235
B	VAL 5	ASP 233
C	VAL 2	ASP 1341
D	GLU 15	GLY 1376
E	ALA 2	GLU 79
F	SER 89	LEU 611
G	T 1	G 27
H	C 1	G 21
I	G 1	A 2

There are126 helices in PDB entry 9YNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	154	162	Right-handed alpha
Helix 5	AA5	A	212	234	Right-handed alpha
Helix 6	AA6	B	34	50	Right-handed alpha
Helix 7	AA7	B	77	87	Right-handed alpha
Helix 8	AA8	B	154	161	Right-handed alpha
Helix 9	AA9	B	212	233	Right-handed alpha
Helix 10	AB1	C	6	10	Right-handed 310
Helix 11	AB2	C	29	40	Right-handed alpha
Helix 12	AB3	C	48	57	Right-handed alpha
Helix 13	AB4	C	81	89	Right-handed alpha
Helix 14	AB5	C	206	213	Right-handed alpha
Helix 15	AB6	C	216	225	Right-handed alpha
Helix 16	AB7	C	242	246	Right-handed 310
Helix 17	AB8	C	270	281	Right-handed alpha
Helix 18	AB9	C	288	293	Right-handed 310
Helix 19	AC1	C	318	328	Right-handed alpha
Helix 20	AC2	C	345	354	Right-handed alpha
Helix 21	AC3	C	358	371	Right-handed alpha
Helix 22	AC4	C	377	390	Right-handed alpha
Helix 23	AC5	C	397	409	Right-handed alpha
Helix 24	AC6	C	421	437	Right-handed alpha
Helix 25	AC7	C	455	482	Right-handed alpha
Helix 26	AC8	C	488	492	Right-handed 310
Helix 27	AC9	C	494	508	Right-handed alpha
Helix 28	AD1	C	519	528	Right-handed alpha
Helix 29	AD2	C	551	555	Right-handed 310
Helix 30	AD3	C	608	612	Right-handed alpha
Helix 31	AD4	C	648	650	Right-handed 310
Helix 32	AD5	C	663	668	Right-handed 310
Helix 33	AD6	C	675	688	Right-handed alpha
Helix 34	AD7	C	704	712	Right-handed alpha
Helix 35	AD8	C	820	825	Right-handed alpha
Helix 36	AD9	C	896	907	Right-handed alpha
Helix 37	AE1	C	942	983	Right-handed alpha
Helix 38	AE2	C	985	992	Right-handed alpha
Helix 39	AE3	C	993	997	Right-handed 310
Helix 40	AE4	C	1005	1038	Right-handed alpha
Helix 41	AE5	C	1081	1085	Right-handed 310
Helix 42	AE6	C	1101	1107	Right-handed alpha
Helix 43	AE7	C	1109	1134	Right-handed alpha
Helix 44	AE8	C	1137	1150	Right-handed alpha
Helix 45	AE9	C	1165	1176	Right-handed alpha
Helix 46	AF1	C	1191	1202	Right-handed alpha
Helix 47	AF2	C	1238	1243	Right-handed alpha
Helix 48	AF3	C	1271	1281	Right-handed alpha
Helix 49	AF4	C	1283	1292	Right-handed alpha
Helix 50	AF5	C	1297	1311	Right-handed alpha
Helix 51	AF6	C	1320	1332	Right-handed alpha
Helix 52	AF7	D	26	33	Right-handed alpha
Helix 53	AF8	D	58	63	Right-handed alpha
Helix 54	AF9	D	77	81	Right-handed 310
Helix 55	AG1	D	94	100	Right-handed 310
Helix 56	AG2	D	114	119	Right-handed alpha
Helix 57	AG3	D	122	129	Right-handed alpha
Helix 58	AG4	D	131	140	Right-handed alpha
Helix 59	AG5	D	161	173	Right-handed alpha
Helix 60	AG6	D	181	191	Right-handed alpha
Helix 61	AG7	D	193	208	Right-handed alpha
Helix 62	AG8	D	212	231	Right-handed alpha
Helix 63	AG9	D	233	236	Right-handed 310
Helix 64	AH1	D	246	250	Right-handed 310
Helix 65	AH2	D	263	286	Right-handed alpha
Helix 66	AH3	D	288	308	Right-handed alpha
Helix 67	AH4	D	327	331	Right-handed 310
Helix 68	AH5	D	336	341	Right-handed alpha
Helix 69	AH6	D	370	377	Right-handed alpha
Helix 70	AH7	D	377	388	Right-handed alpha
Helix 71	AH8	D	393	403	Right-handed alpha
Helix 72	AH9	D	405	416	Right-handed alpha
Helix 73	AI1	D	430	432	Right-handed 310
Helix 74	AI2	D	450	452	Right-handed 310
Helix 75	AI3	D	453	458	Right-handed alpha
Helix 76	AI4	D	473	484	Right-handed alpha
Helix 77	AI5	D	504	515	Right-handed alpha
Helix 78	AI6	D	528	539	Right-handed alpha
Helix 79	AI7	D	574	581	Right-handed alpha
Helix 80	AI8	D	588	593	Right-handed 310
Helix 81	AI9	D	597	612	Right-handed alpha
Helix 82	AJ1	D	613	636	Right-handed alpha
Helix 83	AJ2	D	640	644	Right-handed 310
Helix 84	AJ3	D	649	670	Right-handed alpha
Helix 85	AJ4	D	677	702	Right-handed alpha
Helix 86	AJ5	D	720	728	Right-handed alpha
Helix 87	AJ6	D	733	742	Right-handed alpha
Helix 88	AJ7	D	768	784	Right-handed alpha
Helix 89	AJ8	D	790	804	Right-handed alpha
Helix 90	AJ9	D	834	840	Right-handed alpha
Helix 91	AK1	D	865	876	Right-handed alpha
Helix 92	AK2	D	896	900	Right-handed alpha
Helix 93	AK3	D	914	933	Right-handed alpha
Helix 94	AK4	D	934	938	Right-handed 310
Helix 95	AK5	D	1133	1146	Right-handed alpha
Helix 96	AK6	D	1216	1224	Right-handed alpha
Helix 97	AK7	D	1225	1244	Right-handed alpha
Helix 98	AK8	D	1249	1261	Right-handed alpha
Helix 99	AK9	D	1282	1295	Right-handed alpha
Helix 100	AL1	D	1308	1314	Right-handed alpha
Helix 101	AL2	D	1318	1324	Right-handed alpha
Helix 102	AL3	D	1327	1339	Right-handed alpha
Helix 103	AL4	D	1346	1353	Right-handed alpha
Helix 104	AL5	D	1361	1376	Right-handed alpha
Helix 105	AL6	E	6	14	Right-handed alpha
Helix 106	AL7	E	15	34	Right-handed alpha
Helix 107	AL8	E	45	56	Right-handed alpha
Helix 108	AL9	E	60	78	Right-handed alpha
Helix 109	AM1	F	96	106	Right-handed alpha
Helix 110	AM2	F	112	136	Right-handed alpha
Helix 111	AM3	F	266	286	Right-handed alpha
Helix 112	AM4	F	356	383	Right-handed alpha
Helix 113	AM5	F	383	392	Right-handed alpha
Helix 114	AM6	F	393	395	Right-handed 310
Helix 115	AM7	F	400	418	Right-handed alpha
Helix 116	AM8	F	419	424	Right-handed 310
Helix 117	AM9	F	426	446	Right-handed alpha
Helix 118	AN1	F	453	475	Right-handed alpha
Helix 119	AN2	F	479	488	Right-handed alpha
Helix 120	AN3	F	490	501	Right-handed alpha
Helix 121	AN4	F	518	523	Right-handed 310
Helix 122	AN5	F	530	551	Right-handed alpha
Helix 123	AN6	F	552	564	Right-handed alpha
Helix 124	AN7	F	572	580	Right-handed alpha
Helix 125	AN8	F	583	598	Right-handed alpha
Helix 126	AN9	F	606	611	Right-handed 310

There are 45 sheets in PDB entry 9YNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	188	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	105	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	24	31	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	190	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	104	anti-parallel
Strand 4	C	116	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	138	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	529	531	parallel
Strand 4	C	572	574	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	160	first strand
Strand 2	C	171	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	287	first strand
Strand 2	C	236	239	anti-parallel
Strand 3	C	227	233	anti-parallel
Strand 4	C	332	336	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	260	261	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	308	311	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	607	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	646	first strand
Strand 2	C	633	638	anti-parallel
Strand 3	C	616	617	anti-parallel
Strand 4	C	652	653	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	784	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	721	728	anti-parallel
Strand 4	C	776	778	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1209	1210	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1065	1067	anti-parallel
Strand 4	C	1073	1080	anti-parallel
Strand 5	C	815	819	parallel
Strand 6	C	1096	1098	anti-parallel
Strand 7	C	798	804	parallel
Strand 8	C	1225	1234	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	841	first strand
Strand 2	C	1046	1058	anti-parallel
Strand 3	C	926	935	anti-parallel
Strand 4	C	876	877	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	889	anti-parallel
Strand 3	C	913	915	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	449	anti-parallel
Strand 8	D	350	357	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1269	1270	first strand
Strand 2	D	345	346	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1340	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	148	anti-parallel
Strand 3	D	177	179	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	260	262	anti-parallel
Strand 3	F	505	506	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	557	parallel
Strand 3	D	563	573	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	703	707	first strand
Strand 2	D	713	717	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	826	first strand
Strand 2	D	831	833	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	848	849	first strand
Strand 2	D	857	858	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	991	993	first strand
Strand 2	D	983	985	anti-parallel
Strand 3	D	956	959	anti-parallel
Strand 4	D	1010	1011	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1026	first strand
Strand 2	D	1122	1125	anti-parallel
Strand 3	D	1106	1107	anti-parallel
Strand 4	D	1057	1061	anti-parallel
Strand 5	D	1046	1050	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1034	1038	first strand
Strand 2	D	1077	1081	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1165	first strand
Strand 2	D	1173	1178	anti-parallel
Strand 3	D	1186	1190	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YNP