Analysis of interatomic Contacts of Structural Units in PDB entry:
9YNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YNV entry

There are 4 chains in PDB entry 9YNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 LEU 54VAL 140
N
 GLU 54SER 405
M
 SER 12ALA 519
O
 PRO 264GLU 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 9YNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
61 73Right-handed alpha
Helix 2
AA2
H
76 90Right-handed alpha
Helix 3
AA3
H
93 106Right-handed alpha
Helix 4
AA4
H
112 127Right-handed alpha
Helix 5
AA5
N
55 63Right-handed alpha
Helix 6
AA6
N
77 94Right-handed alpha
Helix 7
AA7
N
98 107Right-handed alpha
Helix 8
AA8
N
147 152Right-handed 310
Helix 9
AA9
N
153 170Right-handed alpha
Helix 10
AB1
N
183 190Right-handed alpha
Helix 11
AB2
N
228 246Right-handed alpha
Helix 12
AB3
N
257 261Right-handed 310
Helix 13
AB4
N
269 272Right-handed 310
Helix 14
AB5
N
273 280Right-handed alpha
Helix 15
AB6
N
282 289Right-handed alpha
Helix 16
AB7
N
297 311Right-handed alpha
Helix 17
AB8
N
312 315Right-handed 310
Helix 18
AB9
N
327 333Right-handed alpha
Helix 19
AC1
N
338 348Right-handed alpha
Helix 20
AC2
N
353 372Right-handed alpha
Helix 21
AC3
N
376 396Right-handed alpha
Helix 22
AC4
N
399 403Right-handed 310
Helix 23
AC5
M
48 54Right-handed alpha
Helix 24
AC6
M
83 98Right-handed alpha
Helix 25
AC7
M
101 110Right-handed alpha
Helix 26
AC8
M
114 126Right-handed alpha
Helix 27
AC9
M
143 149Right-handed alpha
Helix 28
AD1
M
150 172Right-handed alpha
Helix 29
AD2
M
185 189Right-handed 310
Helix 30
AD3
M
206 213Right-handed 310
Helix 31
AD4
M
232 261Right-handed alpha
Helix 32
AD5
M
262 264Right-handed 310
Helix 33
AD6
M
266 277Right-handed alpha
Helix 34
AD7
M
278 289Right-handed alpha
Helix 35
AD8
M
290 295Right-handed 310
Helix 36
AD9
M
296 325Right-handed alpha
Helix 37
AE1
M
330 348Right-handed alpha
Helix 38
AE2
M
375 381Right-handed alpha
Helix 39
AE3
M
386 390Right-handed 310
Helix 40
AE4
M
447 451Right-handed 310
Helix 41
AE5
M
452 463Right-handed alpha
Helix 42
AE6
M
465 483Right-handed alpha
Helix 43
AE7
M
488 497Right-handed alpha
Helix 44
AE8
M
499 514Right-handed alpha
Helix 45
AE9
O
277 286Right-handed alpha
Helix 46
AF1
O
295 299Right-handed 310
Helix 47
AF2
O
318 327Right-handed alpha
Helix 48
AF3
O
328 330Right-handed 310
Helix 49
AF4
O
348 352Right-handed 310
Helix 50
AF5
O
360 367Right-handed alpha
Helix 51
AF6
O
381 385Right-handed 310
Helix 52
AF7
O
393 397Right-handed 310
Helix 53
AF8
O
398 403Right-handed alpha
Helix 54
AF9
O
410 419Right-handed alpha
Helix 55
AG1
O
502 507Right-handed alpha
Helix 56
AG2
O
514 530Right-handed alpha
Helix 57
AG3
O
565 569Right-handed 310
Helix 58
AG4
O
572 634Right-handed alpha
Helix 59
AG5
O
667 685Right-handed alpha
Helix 60
AG6
O
686 694Right-handed 310
Helix 61
AG7
O
708 730Right-handed alpha
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There are 3 sheets in PDB entry 9YNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
66 70first strand
Strand 2
N
112 118anti-parallel
Strand 3
N
123 132anti-parallel
Strand 4
N
137 145anti-parallel
Strand 5
N
174 179parallel
Strand 6
N
214 219anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
253 254first strand
Strand 2
M
67 70anti-parallel
Strand 3
M
33 36anti-parallel
Strand 4
M
45 47anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
486 487first strand
Strand 2
M
517 518parallel
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