Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YOK entry

There are 5 chains in PDB entry 9YOK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	ASP 1146
B	ALA 27	ASP 1146
C	GLN 14	ASP 1146
D	GLU 1	SER 230
E	GLN 1	SER 213

There are 61 helices in PDB entry 9YOK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	367	372	Right-handed alpha
Helix 3	AA3	A	383	390	Right-handed 310
Helix 4	AA4	A	406	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	737	744	Right-handed alpha
Helix 7	AA7	A	746	755	Right-handed alpha
Helix 8	AA8	A	758	783	Right-handed alpha
Helix 9	AA9	A	816	826	Right-handed alpha
Helix 10	AB1	A	866	885	Right-handed alpha
Helix 11	AB2	A	886	890	Right-handed 310
Helix 12	AB3	A	897	908	Right-handed alpha
Helix 13	AB4	A	912	919	Right-handed alpha
Helix 14	AB5	A	919	939	Right-handed alpha
Helix 15	AB6	A	945	965	Right-handed alpha
Helix 16	AB7	A	966	968	Right-handed 310
Helix 17	AB8	A	976	982	Right-handed alpha
Helix 18	AB9	A	985	1033	Right-handed alpha
Helix 19	AC1	A	1141	1145	Right-handed 310
Helix 20	AC2	B	294	304	Right-handed alpha
Helix 21	AC3	B	338	343	Right-handed alpha
Helix 22	AC4	B	349	353	Right-handed 310
Helix 23	AC5	B	364	370	Right-handed alpha
Helix 24	AC6	B	404	408	Right-handed 310
Helix 25	AC7	B	416	422	Right-handed alpha
Helix 26	AC8	B	502	506	Right-handed 310
Helix 27	AC9	B	737	744	Right-handed alpha
Helix 28	AD1	B	746	755	Right-handed alpha
Helix 29	AD2	B	758	783	Right-handed alpha
Helix 30	AD3	B	816	824	Right-handed alpha
Helix 31	AD4	B	866	885	Right-handed alpha
Helix 32	AD5	B	886	890	Right-handed 310
Helix 33	AD6	B	897	909	Right-handed alpha
Helix 34	AD7	B	912	919	Right-handed alpha
Helix 35	AD8	B	919	942	Right-handed alpha
Helix 36	AD9	B	945	965	Right-handed alpha
Helix 37	AE1	B	966	968	Right-handed 310
Helix 38	AE2	B	976	982	Right-handed alpha
Helix 39	AE3	B	985	1033	Right-handed alpha
Helix 40	AE4	B	1141	1146	Right-handed alpha
Helix 41	AE5	C	294	304	Right-handed alpha
Helix 42	AE6	C	337	343	Right-handed alpha
Helix 43	AE7	C	383	388	Right-handed 310
Helix 44	AE8	C	417	422	Right-handed alpha
Helix 45	AE9	C	737	742	Right-handed alpha
Helix 46	AF1	C	746	755	Right-handed alpha
Helix 47	AF2	C	758	783	Right-handed alpha
Helix 48	AF3	C	816	826	Right-handed alpha
Helix 49	AF4	C	866	885	Right-handed alpha
Helix 50	AF5	C	886	890	Right-handed 310
Helix 51	AF6	C	897	908	Right-handed alpha
Helix 52	AF7	C	912	919	Right-handed alpha
Helix 53	AF8	C	919	939	Right-handed alpha
Helix 54	AF9	C	945	965	Right-handed alpha
Helix 55	AG1	C	976	982	Right-handed alpha
Helix 56	AG2	C	985	1033	Right-handed alpha
Helix 57	AG3	D	171	173	Right-handed 310
Helix 58	AG4	D	200	204	Right-handed 310
Helix 59	AG5	E	81	85	Right-handed 310
Helix 60	AG6	E	122	128	Right-handed alpha
Helix 61	AG7	E	182	189	Right-handed alpha

There are 58 sheets in PDB entry 9YOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	89	93	anti-parallel
Strand 5	A	191	195	anti-parallel
Strand 6	A	203	206	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	565	566	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	168	170	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	316	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel
Strand 7	B	42	43	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	392	403	anti-parallel
Strand 3	A	507	517	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	693	696	parallel
Strand 3	A	670	673	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	712	first strand
Strand 2	A	1075	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1103	1105	anti-parallel
Strand 5	A	1113	1114	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	728	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	C	701	702	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	63	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	264	265	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	103	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	131	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	200	208	anti-parallel
Strand 3	B	188	197	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	268	269	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel
Strand 6	B	565	566	anti-parallel
Strand 7	C	42	43	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	402	anti-parallel
Strand 3	B	508	515	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	492	493	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	696	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1076	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1080	1082	anti-parallel
Strand 4	B	1132	1134	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1096	first strand
Strand 2	B	1103	1105	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	61	62	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	271	278	anti-parallel
Strand 3	C	287	290	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	C	201	204	anti-parallel
Strand 3	C	190	196	anti-parallel
Strand 4	C	89	94	anti-parallel
Strand 5	C	268	269	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	171	first strand
Strand 2	C	126	132	anti-parallel
Strand 3	C	116	121	anti-parallel
Strand 4	C	101	107	anti-parallel
Strand 5	C	239	242	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	314	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	540	543	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	400	first strand
Strand 2	C	508	514	anti-parallel
Strand 3	C	434	437	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	454	first strand
Strand 2	C	492	493	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	575	577	first strand
Strand 2	C	584	586	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	660	first strand
Strand 2	C	693	697	parallel
Strand 3	C	670	673	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	715	first strand
Strand 2	C	1072	1077	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	21	25	anti-parallel
Strand 3	D	81	84	anti-parallel
Strand 4	D	73	76	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	122	126	parallel
Strand 3	D	95	97	anti-parallel
Strand 4	D	40	42	anti-parallel
Strand 5	D	46	48	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	51	54	anti-parallel
Strand 3	D	34	37	anti-parallel
Strand 4	D	101	103	anti-parallel
Strand 5	D	115	117	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	154	158	anti-parallel
Strand 3	D	191	196	anti-parallel
Strand 4	D	179	180	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	154	158	anti-parallel
Strand 3	D	191	196	anti-parallel
Strand 4	D	184	185	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	169	first strand
Strand 2	D	210	215	anti-parallel
Strand 3	D	220	225	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	104	106	parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	23	first strand
Strand 2	E	72	78	anti-parallel
Strand 3	E	64	69	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	51	first strand
Strand 2	E	36	40	anti-parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	97	99	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	131	140	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	131	140	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	166	167	anti-parallel

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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	155	first strand
Strand 2	E	145	151	anti-parallel
Strand 3	E	192	198	anti-parallel
Strand 4	E	201	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YOK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOK