Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YOL entry

There are 6 chains in PDB entry 9YOL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Q
 GLN 328LYS 351
B
 VAL 135GLU 477
C
 ALA 133VAL 396
H
 LEU 217GLY 262
I
 LEU 598LEU 646
A
 MET 1TYR 3892
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are225 helices in PDB entry 9YOL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Q
328 343Right-handed alpha
Helix 2
AA2
B
411 422Right-handed alpha
Helix 3
AA3
B
425 432Right-handed alpha
Helix 4
AA4
B
457 477Right-handed alpha
Helix 5
AA5
C
134 146Right-handed alpha
Helix 6
AA6
C
152 158Right-handed alpha
Helix 7
AA7
C
281 292Right-handed alpha
Helix 8
AA8
C
300 307Right-handed alpha
Helix 9
AA9
H
220 226Right-handed alpha
Helix 10
AB1
H
227 230Right-handed 310
Helix 11
AB2
H
245 258Right-handed alpha
Helix 12
AB3
I
605 609Right-handed 310
Helix 13
AB4
A
2 15Right-handed alpha
Helix 14
AB5
A
41 57Right-handed alpha
Helix 15
AB6
A
58 60Right-handed 310
Helix 16
AB7
A
65 82Right-handed alpha
Helix 17
AB8
A
91 110Right-handed alpha
Helix 18
AB9
A
120 123Right-handed 310
Helix 19
AC1
A
124 138Right-handed alpha
Helix 20
AC2
A
139 157Right-handed alpha
Helix 21
AC3
A
157 162Right-handed alpha
Helix 22
AC4
A
164 187Right-handed alpha
Helix 23
AC5
A
243 246Right-handed 310
Helix 24
AC6
A
247 253Right-handed alpha
Helix 25
AC7
A
253 265Right-handed alpha
Helix 26
AC8
A
269 286Right-handed alpha
Helix 27
AC9
A
288 302Right-handed alpha
Helix 28
AD1
A
314 336Right-handed alpha
Helix 29
AD2
A
346 348Right-handed 310
Helix 30
AD3
A
349 361Right-handed alpha
Helix 31
AD4
A
365 382Right-handed alpha
Helix 32
AD5
A
383 390Right-handed 310
Helix 33
AD6
A
391 396Right-handed alpha
Helix 34
AD7
A
397 402Right-handed alpha
Helix 35
AD8
A
405 412Right-handed alpha
Helix 36
AD9
A
412 428Right-handed alpha
Helix 37
AE1
A
429 431Right-handed 310
Helix 38
AE2
A
432 448Right-handed alpha
Helix 39
AE3
A
454 472Right-handed alpha
Helix 40
AE4
A
476 501Right-handed alpha
Helix 41
AE5
A
501 519Right-handed alpha
Helix 42
AE6
A
537 542Right-handed 310
Helix 43
AE7
A
549 554Right-handed alpha
Helix 44
AE8
A
556 581Right-handed alpha
Helix 45
AE9
A
594 598Right-handed 310
Helix 46
AF1
A
605 621Right-handed alpha
Helix 47
AF2
A
622 627Right-handed 310
Helix 48
AF3
A
653 666Right-handed alpha
Helix 49
AF4
A
667 669Right-handed 310
Helix 50
AF5
A
671 691Right-handed alpha
Helix 51
AF6
A
692 696Right-handed 310
Helix 52
AF7
A
697 705Right-handed alpha
Helix 53
AF8
A
709 723Right-handed alpha
Helix 54
AF9
A
724 728Right-handed 310
Helix 55
AG1
A
732 753Right-handed alpha
Helix 56
AG2
A
753 762Right-handed alpha
Helix 57
AG3
A
764 776Right-handed alpha
Helix 58
AG4
A
782 796Right-handed alpha
Helix 59
AG5
A
801 809Right-handed alpha
Helix 60
AG6
A
811 826Right-handed alpha
Helix 61
AG7
A
828 840Right-handed alpha
Helix 62
AG8
A
845 850Right-handed alpha
Helix 63
AG9
A
852 855Right-handed 310
Helix 64
AH1
A
856 864Right-handed alpha
Helix 65
AH2
A
867 885Right-handed alpha
Helix 66
AH3
A
886 895Right-handed alpha
Helix 67
AH4
A
897 906Right-handed alpha
Helix 68
AH5
A
907 909Right-handed 310
Helix 69
AH6
A
915 930Right-handed alpha
Helix 70
AH7
A
931 935Right-handed 310
Helix 71
AH8
A
973 982Right-handed alpha
Helix 72
AH9
A
999 1020Right-handed alpha
Helix 73
AI1
A
1027 1041Right-handed alpha
Helix 74
AI2
A
1048 1052Right-handed 310
Helix 75
AI3
A
1059 1080Right-handed alpha
Helix 76
AI4
A
1081 1083Right-handed 310
Helix 77
AI5
A
1086 1116Right-handed alpha
Helix 78
AI6
A
1134 1144Right-handed alpha
Helix 79
AI7
A
1148 1171Right-handed alpha
Helix 80
AI8
A
1175 1179Right-handed 310
Helix 81
AI9
A
1180 1193Right-handed alpha
Helix 82
AJ1
A
1197 1214Right-handed alpha
Helix 83
AJ2
A
1218 1240Right-handed alpha
Helix 84
AJ3
A
1246 1264Right-handed alpha
Helix 85
AJ4
A
1268 1273Right-handed alpha
Helix 86
AJ5
A
1296 1305Right-handed alpha
Helix 87
AJ6
A
1311 1329Right-handed alpha
Helix 88
AJ7
A
1332 1338Right-handed alpha
Helix 89
AJ8
A
1340 1351Right-handed alpha
Helix 90
AJ9
A
1352 1356Right-handed 310
Helix 91
AK1
A
1357 1372Right-handed alpha
Helix 92
AK2
A
1382 1398Right-handed alpha
Helix 93
AK3
A
1409 1432Right-handed alpha
Helix 94
AK4
A
1444 1457Right-handed alpha
Helix 95
AK5
A
1460 1479Right-handed alpha
Helix 96
AK6
A
1482 1496Right-handed alpha
Helix 97
AK7
A
1504 1518Right-handed alpha
Helix 98
AK8
A
1525 1538Right-handed alpha
Helix 99
AK9
A
1539 1547Right-handed alpha
Helix 100
AL1
A
1550 1553Right-handed 310
Helix 101
AL2
A
1554 1565Right-handed alpha
Helix 102
AL3
A
1571 1576Right-handed 310
Helix 103
AL4
A
1577 1593Right-handed alpha
Helix 104
AL5
A
1600 1609Right-handed alpha
Helix 105
AL6
A
1611 1621Right-handed alpha
Helix 106
AL7
A
1625 1637Right-handed alpha
Helix 107
AL8
A
1641 1651Right-handed alpha
Helix 108
AL9
A
1651 1666Right-handed alpha
Helix 109
AM1
A
1669 1684Right-handed alpha
Helix 110
AM2
A
1692 1697Right-handed 310
Helix 111
AM3
A
1698 1718Right-handed alpha
Helix 112
AM4
A
1722 1724Right-handed 310
Helix 113
AM5
A
1725 1746Right-handed alpha
Helix 114
AM6
A
1750 1763Right-handed alpha
Helix 115
AM7
A
1769 1780Right-handed alpha
Helix 116
AM8
A
1789 1802Right-handed alpha
Helix 117
AM9
A
1807 1817Right-handed alpha
Helix 118
AN1
A
1817 1828Right-handed alpha
Helix 119
AN2
A
1841 1852Right-handed alpha
Helix 120
AN3
A
1859 1864Right-handed alpha
Helix 121
AN4
A
1868 1887Right-handed alpha
Helix 122
AN5
A
1888 1891Right-handed 310
Helix 123
AN6
A
1894 1906Right-handed alpha
Helix 124
AN7
A
1910 1928Right-handed alpha
Helix 125
AN8
A
1931 1944Right-handed alpha
Helix 126
AN9
A
1950 1962Right-handed alpha
Helix 127
AO1
A
1964 1969Right-handed alpha
Helix 128
AO2
A
1978 1991Right-handed alpha
Helix 129
AO3
A
1994 2007Right-handed alpha
Helix 130
AO4
A
2008 2014Right-handed alpha
Helix 131
AO5
A
2015 2018Right-handed 310
Helix 132
AO6
A
2019 2031Right-handed alpha
Helix 133
AO7
A
2037 2064Right-handed alpha
Helix 134
AO8
A
2100 2117Right-handed alpha
Helix 135
AO9
A
2147 2159Right-handed alpha
Helix 136
AP1
A
2163 2168Right-handed 310
Helix 137
AP2
A
2174 2183Right-handed alpha
Helix 138
AP3
A
2184 2192Right-handed alpha
Helix 139
AP4
A
2202 2222Right-handed alpha
Helix 140
AP5
A
2224 2244Right-handed alpha
Helix 141
AP6
A
2247 2256Right-handed alpha
Helix 142
AP7
A
2269 2278Right-handed alpha
Helix 143
AP8
A
2299 2315Right-handed alpha
Helix 144
AP9
A
2316 2331Right-handed alpha
Helix 145
AQ1
A
2332 2335Right-handed 310
Helix 146
AQ2
A
2338 2349Right-handed alpha
Helix 147
AQ3
A
2349 2367Right-handed alpha
Helix 148
AQ4
A
2381 2401Right-handed alpha
Helix 149
AQ5
A
2402 2408Right-handed 310
Helix 150
AQ6
A
2409 2424Right-handed alpha
Helix 151
AQ7
A
2426 2442Right-handed alpha
Helix 152
AQ8
A
2453 2460Right-handed alpha
Helix 153
AQ9
A
2461 2467Right-handed 310
Helix 154
AR1
A
2470 2485Right-handed alpha
Helix 155
AR2
A
2492 2498Right-handed alpha
Helix 156
AR3
A
2498 2507Right-handed alpha
Helix 157
AR4
A
2510 2525Right-handed alpha
Helix 158
AR5
A
2528 2539Right-handed alpha
Helix 159
AR6
A
2542 2546Right-handed 310
Helix 160
AR7
A
2550 2559Right-handed alpha
Helix 161
AR8
A
2560 2562Right-handed 310
Helix 162
AR9
A
2579 2585Right-handed alpha
Helix 163
AS1
A
2586 2588Right-handed 310
Helix 164
AS2
A
2599 2617Right-handed alpha
Helix 165
AS3
A
2620 2632Right-handed alpha
Helix 166
AS4
A
2635 2652Right-handed alpha
Helix 167
AS5
A
2653 2654Right-handed 310
Helix 168
AS6
A
2655 2657Right-handed 310
Helix 169
AS7
A
2658 2671Right-handed alpha
Helix 170
AS8
A
2672 2679Right-handed 310
Helix 171
AS9
A
2684 2696Right-handed alpha
Helix 172
AT1
A
2703 2715Right-handed alpha
Helix 173
AT2
A
2716 2730Right-handed alpha
Helix 174
AT3
A
2735 2754Right-handed alpha
Helix 175
AT4
A
2755 2765Right-handed alpha
Helix 176
AT5
A
2769 2781Right-handed alpha
Helix 177
AT6
A
2783 2800Right-handed alpha
Helix 178
AT7
A
2806 2824Right-handed alpha
Helix 179
AT8
A
2826 2838Right-handed alpha
Helix 180
AT9
A
2839 2849Right-handed alpha
Helix 181
AU1
A
2850 2855Right-handed 310
Helix 182
AU2
A
2856 2870Right-handed alpha
Helix 183
AU3
A
2875 2892Right-handed alpha
Helix 184
AU4
A
2896 2917Right-handed alpha
Helix 185
AU5
A
2926 2954Right-handed alpha
Helix 186
AU6
A
2960 2973Right-handed alpha
Helix 187
AU7
A
2981 3005Right-handed alpha
Helix 188
AU8
A
3021 3041Right-handed alpha
Helix 189
AU9
A
3045 3053Right-handed alpha
Helix 190
AV1
A
3061 3075Right-handed alpha
Helix 191
AV2
A
3082 3092Right-handed alpha
Helix 192
AV3
A
3099 3118Right-handed alpha
Helix 193
AV4
A
3119 3134Right-handed alpha
Helix 194
AV5
A
3137 3155Right-handed alpha
Helix 195
AV6
A
3158 3177Right-handed alpha
Helix 196
AV7
A
3180 3193Right-handed alpha
Helix 197
AV8
A
3203 3208Right-handed alpha
Helix 198
AV9
A
3213 3219Right-handed 310
Helix 199
AW1
A
3220 3228Right-handed alpha
Helix 200
AW2
A
3232 3245Right-handed alpha
Helix 201
AW3
A
3247 3250Right-handed 310
Helix 202
AW4
A
3251 3267Right-handed alpha
Helix 203
AW5
A
3362 3377Right-handed alpha
Helix 204
AW6
A
3378 3396Right-handed alpha
Helix 205
AW7
A
3399 3422Right-handed alpha
Helix 206
AW8
A
3435 3447Right-handed alpha
Helix 207
AW9
A
3452 3461Right-handed alpha
Helix 208
AX1
A
3466 3487Right-handed alpha
Helix 209
AX2
A
3495 3497Right-handed 310
Helix 210
AX3
A
3519 3523Right-handed 310
Helix 211
AX4
A
3575 3596Right-handed alpha
Helix 212
AX5
A
3596 3601Right-handed alpha
Helix 213
AX6
A
3630 3641Right-handed alpha
Helix 214
AX7
A
3646 3662Right-handed alpha
Helix 215
AX8
A
3672 3686Right-handed alpha
Helix 216
AX9
A
3690 3699Right-handed alpha
Helix 217
AY1
A
3702 3728Right-handed alpha
Helix 218
AY2
A
3733 3735Right-handed 310
Helix 219
AY3
A
3773 3781Right-handed alpha
Helix 220
AY4
A
3781 3788Right-handed alpha
Helix 221
AY5
A
3788 3801Right-handed alpha
Helix 222
AY6
A
3803 3827Right-handed alpha
Helix 223
AY7
A
3833 3857Right-handed alpha
Helix 224
AY8
A
3866 3878Right-handed alpha
Helix 225
AY9
A
3878 3883Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9YOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
141 143anti-parallel
Strand 3
B
151 152anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
966 969anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3492 3493first strand
Strand 2
A
3540 3545anti-parallel
Strand 3
A
3550 3558anti-parallel
Strand 4
A
3534 3537anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3492 3493first strand
Strand 2
A
3540 3545anti-parallel
Strand 3
A
3550 3558anti-parallel
Strand 4
A
3563 3569anti-parallel
Strand 5
A
3618 3622anti-parallel
Strand 6
A
3611 3615anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3627 3629first strand
Strand 2
A
3737 3740anti-parallel
Strand 3
A
3746 3748anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il