Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YOP entry

There are 6 chains in PDB entry 9YOP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LEU 943
B	SER 4	LEU 943
C	ALA 36	SER 187
D	ALA 36	SER 187
E	PHE 22	GLY 163
F	PHE 22	GLY 163

There are108 helices in PDB entry 9YOP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	16	Right-handed 310
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	97	111	Right-handed alpha
Helix 6	AA6	A	135	142	Right-handed alpha
Helix 7	AA7	A	153	169	Right-handed alpha
Helix 8	AA8	A	183	201	Right-handed alpha
Helix 9	AA9	A	216	231	Right-handed alpha
Helix 10	AB1	A	270	274	Right-handed 310
Helix 11	AB2	A	283	290	Right-handed alpha
Helix 12	AB3	A	294	302	Right-handed alpha
Helix 13	AB4	A	306	310	Right-handed 310
Helix 14	AB5	A	324	339	Right-handed alpha
Helix 15	AB6	A	342	360	Right-handed alpha
Helix 16	AB7	A	378	389	Right-handed alpha
Helix 17	AB8	A	391	401	Right-handed alpha
Helix 18	AB9	A	416	447	Right-handed alpha
Helix 19	AC1	A	472	494	Right-handed alpha
Helix 20	AC2	A	494	504	Right-handed alpha
Helix 21	AC3	A	517	526	Right-handed alpha
Helix 22	AC4	A	529	540	Right-handed alpha
Helix 23	AC5	A	544	557	Right-handed alpha
Helix 24	AC6	A	592	599	Right-handed alpha
Helix 25	AC7	A	602	611	Right-handed alpha
Helix 26	AC8	A	614	621	Right-handed alpha
Helix 27	AC9	A	646	664	Right-handed alpha
Helix 28	AD1	A	685	695	Right-handed alpha
Helix 29	AD2	A	697	708	Right-handed alpha
Helix 30	AD3	A	715	722	Right-handed alpha
Helix 31	AD4	A	726	730	Right-handed 310
Helix 32	AD5	A	737	748	Right-handed alpha
Helix 33	AD6	A	768	822	Right-handed alpha
Helix 34	AD7	A	823	826	Right-handed 310
Helix 35	AD8	A	827	837	Right-handed alpha
Helix 36	AD9	A	844	943	Right-handed alpha
Helix 37	AE1	B	6	16	Right-handed 310
Helix 38	AE2	B	19	29	Right-handed alpha
Helix 39	AE3	B	81	85	Right-handed 310
Helix 40	AE4	B	97	111	Right-handed alpha
Helix 41	AE5	B	131	134	Right-handed 310
Helix 42	AE6	B	135	142	Right-handed alpha
Helix 43	AE7	B	153	169	Right-handed alpha
Helix 44	AE8	B	183	200	Right-handed alpha
Helix 45	AE9	B	217	232	Right-handed alpha
Helix 46	AF1	B	270	274	Right-handed 310
Helix 47	AF2	B	284	289	Right-handed alpha
Helix 48	AF3	B	290	292	Right-handed 310
Helix 49	AF4	B	294	300	Right-handed alpha
Helix 50	AF5	B	306	310	Right-handed 310
Helix 51	AF6	B	324	339	Right-handed alpha
Helix 52	AF7	B	342	360	Right-handed alpha
Helix 53	AF8	B	378	389	Right-handed alpha
Helix 54	AF9	B	392	401	Right-handed alpha
Helix 55	AG1	B	416	448	Right-handed alpha
Helix 56	AG2	B	472	495	Right-handed alpha
Helix 57	AG3	B	495	504	Right-handed alpha
Helix 58	AG4	B	517	526	Right-handed alpha
Helix 59	AG5	B	530	540	Right-handed alpha
Helix 60	AG6	B	544	557	Right-handed alpha
Helix 61	AG7	B	592	599	Right-handed alpha
Helix 62	AG8	B	602	610	Right-handed alpha
Helix 63	AG9	B	614	622	Right-handed alpha
Helix 64	AH1	B	646	663	Right-handed alpha
Helix 65	AH2	B	685	697	Right-handed alpha
Helix 66	AH3	B	697	708	Right-handed alpha
Helix 67	AH4	B	715	722	Right-handed alpha
Helix 68	AH5	B	723	726	Right-handed 310
Helix 69	AH6	B	737	748	Right-handed alpha
Helix 70	AH7	B	768	826	Right-handed alpha
Helix 71	AH8	B	827	837	Right-handed alpha
Helix 72	AH9	B	842	943	Right-handed alpha
Helix 73	AI1	C	42	55	Right-handed alpha
Helix 74	AI2	C	56	60	Right-handed 310
Helix 75	AI3	C	68	76	Right-handed alpha
Helix 76	AI4	C	81	90	Right-handed alpha
Helix 77	AI5	C	93	99	Right-handed 310
Helix 78	AI6	C	103	117	Right-handed alpha
Helix 79	AI7	C	122	131	Right-handed alpha
Helix 80	AI8	C	132	134	Right-handed 310
Helix 81	AI9	C	143	153	Right-handed alpha
Helix 82	AJ1	C	158	167	Right-handed alpha
Helix 83	AJ2	C	177	187	Right-handed alpha
Helix 84	AJ3	D	42	56	Right-handed alpha
Helix 85	AJ4	D	68	76	Right-handed alpha
Helix 86	AJ5	D	81	89	Right-handed alpha
Helix 87	AJ6	D	94	99	Right-handed 310
Helix 88	AJ7	D	107	118	Right-handed alpha
Helix 89	AJ8	D	122	134	Right-handed alpha
Helix 90	AJ9	D	143	153	Right-handed alpha
Helix 91	AK1	D	158	167	Right-handed alpha
Helix 92	AK2	D	178	187	Right-handed alpha
Helix 93	AK3	E	23	38	Right-handed alpha
Helix 94	AK4	E	49	57	Right-handed alpha
Helix 95	AK5	E	82	91	Right-handed alpha
Helix 96	AK6	E	96	108	Right-handed alpha
Helix 97	AK7	E	116	127	Right-handed alpha
Helix 98	AK8	E	132	140	Right-handed alpha
Helix 99	AK9	E	152	162	Right-handed alpha
Helix 100	AL1	F	29	38	Right-handed alpha
Helix 101	AL2	F	47	52	Right-handed 310
Helix 102	AL3	F	69	74	Right-handed 310
Helix 103	AL4	F	81	83	Right-handed 310
Helix 104	AL5	F	84	91	Right-handed alpha
Helix 105	AL6	F	96	107	Right-handed alpha
Helix 106	AL7	F	116	127	Right-handed alpha
Helix 107	AL8	F	135	142	Right-handed alpha
Helix 108	AL9	F	152	161	Right-handed alpha

There are 14 sheets in PDB entry 9YOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	54	anti-parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	68	71	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	178	parallel
Strand 5	A	456	461	parallel
Strand 6	A	244	252	anti-parallel
Strand 7	A	258	268	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	373	375	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	584	588	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	762	765	anti-parallel
Strand 3	A	756	758	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	47	55	anti-parallel
Strand 3	B	58	63	anti-parallel
Strand 4	B	68	72	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	178	parallel
Strand 5	B	455	461	parallel
Strand 6	B	244	252	anti-parallel
Strand 7	B	258	268	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	373	374	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	584	588	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	714	first strand
Strand 2	B	762	765	anti-parallel
Strand 3	B	757	758	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	101	102	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	175	176	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	142	first strand
Strand 2	D	175	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YOP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOP