Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YOQ entry

There are 11 chains in PDB entry 9YOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2495	ARG 2878
B	THR 109	GLU 477
C	GLN 140	PHE 433
D	ASN 46	GLU 766
E	GLY 6	LEU 479
G	ALA 54	ARG 204
H	GLU 160	ALA 483
I	PRO 612	VAL 763
K	ASP 61	ARG 906
Q	VAL 295	GLY 356
F	SER 63	SER 211

There are121 helices in PDB entry 9YOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2531	2539	Right-handed alpha
Helix 2	AA2	A	2655	2657	Right-handed 310
Helix 3	AA3	A	2658	2671	Right-handed alpha
Helix 4	AA4	A	2703	2715	Right-handed alpha
Helix 5	AA5	A	2716	2730	Right-handed alpha
Helix 6	AA6	A	2735	2754	Right-handed alpha
Helix 7	AA7	A	2755	2765	Right-handed alpha
Helix 8	AA8	A	2769	2782	Right-handed alpha
Helix 9	AA9	A	2783	2801	Right-handed alpha
Helix 10	AB1	A	2806	2824	Right-handed alpha
Helix 11	AB2	A	2826	2838	Right-handed alpha
Helix 12	AB3	A	2839	2850	Right-handed alpha
Helix 13	AB4	A	2856	2870	Right-handed alpha
Helix 14	AB5	A	2871	2873	Right-handed 310
Helix 15	AB6	B	118	126	Right-handed alpha
Helix 16	AB7	B	157	167	Right-handed alpha
Helix 17	AB8	B	170	172	Right-handed 310
Helix 18	AB9	B	173	180	Right-handed alpha
Helix 19	AC1	B	291	304	Right-handed alpha
Helix 20	AC2	B	348	350	Right-handed 310
Helix 21	AC3	B	351	364	Right-handed alpha
Helix 22	AC4	B	374	385	Right-handed alpha
Helix 23	AC5	B	387	391	Right-handed 310
Helix 24	AC6	B	411	422	Right-handed alpha
Helix 25	AC7	B	427	432	Right-handed alpha
Helix 26	AC8	B	457	477	Right-handed alpha
Helix 27	AC9	C	141	145	Right-handed alpha
Helix 28	AD1	C	152	170	Right-handed alpha
Helix 29	AD2	C	239	244	Right-handed 310
Helix 30	AD3	C	269	280	Right-handed alpha
Helix 31	AD4	C	281	292	Right-handed alpha
Helix 32	AD5	C	300	309	Right-handed alpha
Helix 33	AD6	C	309	314	Right-handed alpha
Helix 34	AD7	C	319	353	Right-handed alpha
Helix 35	AD8	C	397	409	Right-handed alpha
Helix 36	AD9	C	412	420	Right-handed 310
Helix 37	AE1	D	47	58	Right-handed alpha
Helix 38	AE2	D	92	105	Right-handed alpha
Helix 39	AE3	D	107	115	Right-handed alpha
Helix 40	AE4	D	117	133	Right-handed alpha
Helix 41	AE5	D	134	145	Right-handed alpha
Helix 42	AE6	D	146	150	Right-handed 310
Helix 43	AE7	D	153	161	Right-handed alpha
Helix 44	AE8	D	172	181	Right-handed alpha
Helix 45	AE9	D	189	202	Right-handed alpha
Helix 46	AF1	D	203	205	Right-handed 310
Helix 47	AF2	D	206	217	Right-handed alpha
Helix 48	AF3	D	232	242	Right-handed alpha
Helix 49	AF4	D	263	268	Right-handed alpha
Helix 50	AF5	D	341	352	Right-handed alpha
Helix 51	AF6	E	12	23	Right-handed alpha
Helix 52	AF7	E	28	57	Right-handed alpha
Helix 53	AF8	E	63	74	Right-handed alpha
Helix 54	AF9	E	111	116	Right-handed alpha
Helix 55	AG1	E	165	171	Right-handed alpha
Helix 56	AG2	E	181	186	Right-handed alpha
Helix 57	AG3	E	187	202	Right-handed alpha
Helix 58	AG4	E	207	224	Right-handed alpha
Helix 59	AG5	E	230	245	Right-handed alpha
Helix 60	AG6	E	248	263	Right-handed alpha
Helix 61	AG7	E	270	272	Right-handed 310
Helix 62	AG8	E	273	284	Right-handed alpha
Helix 63	AG9	E	309	334	Right-handed alpha
Helix 64	AH1	E	339	353	Right-handed alpha
Helix 65	AH2	E	358	373	Right-handed alpha
Helix 66	AH3	E	374	382	Right-handed alpha
Helix 67	AH4	E	385	393	Right-handed alpha
Helix 68	AH5	E	393	400	Right-handed alpha
Helix 69	AH6	E	402	422	Right-handed alpha
Helix 70	AH7	E	439	453	Right-handed alpha
Helix 71	AH8	E	454	463	Right-handed alpha
Helix 72	AH9	E	467	475	Right-handed alpha
Helix 73	AI1	G	55	62	Right-handed alpha
Helix 74	AI2	G	71	83	Right-handed alpha
Helix 75	AI3	G	91	120	Right-handed alpha
Helix 76	AI4	G	182	191	Right-handed alpha
Helix 77	AI5	G	192	194	Right-handed 310
Helix 78	AI6	H	161	169	Right-handed alpha
Helix 79	AI7	H	171	180	Right-handed alpha
Helix 80	AI8	H	181	184	Right-handed 310
Helix 81	AI9	H	191	200	Right-handed alpha
Helix 82	AJ1	H	220	226	Right-handed alpha
Helix 83	AJ2	H	227	231	Right-handed 310
Helix 84	AJ3	H	233	238	Right-handed alpha
Helix 85	AJ4	H	242	257	Right-handed alpha
Helix 86	AJ5	H	266	289	Right-handed alpha
Helix 87	AJ6	H	312	329	Right-handed alpha
Helix 88	AJ7	H	339	348	Right-handed alpha
Helix 89	AJ8	H	353	362	Right-handed alpha
Helix 90	AJ9	H	371	381	Right-handed alpha
Helix 91	AK1	H	466	483	Right-handed alpha
Helix 92	AK2	I	650	655	Right-handed alpha
Helix 93	AK3	I	657	668	Right-handed alpha
Helix 94	AK4	I	680	709	Right-handed alpha
Helix 95	AK5	I	715	727	Right-handed alpha
Helix 96	AK6	I	748	763	Right-handed alpha
Helix 97	AK7	K	62	80	Right-handed alpha
Helix 98	AK8	K	89	98	Right-handed alpha
Helix 99	AK9	K	225	230	Right-handed 310
Helix 100	AL1	K	237	256	Right-handed alpha
Helix 101	AL2	K	582	606	Right-handed alpha
Helix 102	AL3	K	607	610	Right-handed 310
Helix 103	AL4	K	621	638	Right-handed alpha
Helix 104	AL5	K	646	650	Right-handed 310
Helix 105	AL6	K	681	689	Right-handed 310
Helix 106	AL7	K	694	698	Right-handed 310
Helix 107	AL8	K	711	713	Right-handed 310
Helix 108	AL9	K	730	754	Right-handed alpha
Helix 109	AM1	K	782	802	Right-handed alpha
Helix 110	AM2	K	807	834	Right-handed alpha
Helix 111	AM3	K	842	847	Right-handed alpha
Helix 112	AM4	K	856	868	Right-handed alpha
Helix 113	AM5	K	871	881	Right-handed alpha
Helix 114	AM6	K	881	906	Right-handed alpha
Helix 115	AM7	Q	296	310	Right-handed alpha
Helix 116	AM8	Q	324	343	Right-handed alpha
Helix 117	AM9	F	68	79	Right-handed alpha
Helix 118	AN1	F	88	110	Right-handed alpha
Helix 119	AN2	F	140	152	Right-handed alpha
Helix 120	AN3	F	172	184	Right-handed alpha
Helix 121	AN4	F	202	206	Right-handed 310

There are 16 sheets in PDB entry 9YOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	141	144	anti-parallel
Strand 3	B	133	137	anti-parallel
Strand 4	B	189	195	parallel
Strand 5	B	282	288	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	184	first strand
Strand 2	D	218	219	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	222	223	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	746	751	first strand
Strand 2	D	756	762	anti-parallel
Strand 3	D	368	375	parallel
Strand 4	E	127	134	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	386	first strand
Strand 2	D	392	397	anti-parallel
Strand 3	D	402	406	anti-parallel
Strand 4	D	426	429	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	441	first strand
Strand 2	D	467	472	anti-parallel
Strand 3	D	477	481	anti-parallel
Strand 4	D	486	491	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	503	first strand
Strand 2	D	509	514	anti-parallel
Strand 3	D	519	523	anti-parallel
Strand 4	D	531	533	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	540	545	first strand
Strand 2	D	551	556	anti-parallel
Strand 3	D	562	567	anti-parallel
Strand 4	D	573	578	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	584	589	first strand
Strand 2	D	595	600	anti-parallel
Strand 3	D	605	609	anti-parallel
Strand 4	D	615	619	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	629	632	first strand
Strand 2	D	638	642	anti-parallel
Strand 3	D	647	652	anti-parallel
Strand 4	D	735	740	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	F	83	84	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	94	first strand
Strand 2	E	100	104	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	110	first strand
Strand 2	K	805	806	anti-parallel
Strand 3	G	180	181	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	404	405	first strand
Strand 2	H	394	396	anti-parallel
Strand 3	F	199	200	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	715	717	first strand
Strand 2	K	773	775	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	838	839	first strand
Strand 2	K	851	852	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOQ