Analysis of interatomic Contacts of Structural Units in PDB entry:
9YOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YOY entry

There is 1 chain in PDB entry 9YOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9YOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
64 75Right-handed alpha
Helix 3
AA3
A
77 87Right-handed alpha
Helix 4
AA4
A
93 105Right-handed alpha
Helix 5
AA5
A
106 117Right-handed alpha
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There are 2 sheets in PDB entry 9YOY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
13 19anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 161first strand
Strand 2
A
143 149anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
123 129anti-parallel
Strand 5
A
58 63anti-parallel
Strand 6
A
41 53anti-parallel
Strand 7
A
165 178anti-parallel
Strand 8
A
181 188anti-parallel
Strand 9
A
198 200anti-parallel
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