Analysis of interatomic Contacts of Structural Units in PDB entry:
9YP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YP9 entry

There are 6 chains in PDB entry 9YP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LEU 943
B	SER 4	LEU 943
C	ALA 36	SER 187
D	ALA 36	SER 187
E	PHE 22	GLY 163
F	PHE 22	GLY 163

There are113 helices in PDB entry 9YP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed 310
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	73	77	Right-handed 310
Helix 4	AA4	A	81	85	Right-handed 310
Helix 5	AA5	A	89	93	Right-handed 310
Helix 6	AA6	A	97	111	Right-handed alpha
Helix 7	AA7	A	131	134	Right-handed 310
Helix 8	AA8	A	135	141	Right-handed alpha
Helix 9	AA9	A	153	169	Right-handed alpha
Helix 10	AB1	A	183	202	Right-handed alpha
Helix 11	AB2	A	215	231	Right-handed alpha
Helix 12	AB3	A	270	275	Right-handed alpha
Helix 13	AB4	A	283	290	Right-handed alpha
Helix 14	AB5	A	294	302	Right-handed alpha
Helix 15	AB6	A	306	310	Right-handed 310
Helix 16	AB7	A	324	339	Right-handed alpha
Helix 17	AB8	A	342	362	Right-handed alpha
Helix 18	AB9	A	378	389	Right-handed alpha
Helix 19	AC1	A	391	401	Right-handed alpha
Helix 20	AC2	A	416	448	Right-handed alpha
Helix 21	AC3	A	472	495	Right-handed alpha
Helix 22	AC4	A	495	505	Right-handed alpha
Helix 23	AC5	A	517	526	Right-handed alpha
Helix 24	AC6	A	529	539	Right-handed alpha
Helix 25	AC7	A	544	557	Right-handed alpha
Helix 26	AC8	A	592	599	Right-handed alpha
Helix 27	AC9	A	602	611	Right-handed alpha
Helix 28	AD1	A	614	621	Right-handed alpha
Helix 29	AD2	A	646	664	Right-handed alpha
Helix 30	AD3	A	685	697	Right-handed alpha
Helix 31	AD4	A	697	708	Right-handed alpha
Helix 32	AD5	A	715	722	Right-handed alpha
Helix 33	AD6	A	723	726	Right-handed 310
Helix 34	AD7	A	737	749	Right-handed alpha
Helix 35	AD8	A	768	822	Right-handed alpha
Helix 36	AD9	A	827	837	Right-handed alpha
Helix 37	AE1	A	843	943	Right-handed alpha
Helix 38	AE2	B	9	11	Right-handed 310
Helix 39	AE3	B	12	17	Right-handed alpha
Helix 40	AE4	B	19	28	Right-handed alpha
Helix 41	AE5	B	81	85	Right-handed 310
Helix 42	AE6	B	89	93	Right-handed 310
Helix 43	AE7	B	97	111	Right-handed alpha
Helix 44	AE8	B	135	141	Right-handed alpha
Helix 45	AE9	B	146	150	Right-handed 310
Helix 46	AF1	B	153	169	Right-handed alpha
Helix 47	AF2	B	183	200	Right-handed alpha
Helix 48	AF3	B	215	231	Right-handed alpha
Helix 49	AF4	B	270	275	Right-handed alpha
Helix 50	AF5	B	283	289	Right-handed alpha
Helix 51	AF6	B	294	302	Right-handed alpha
Helix 52	AF7	B	306	314	Right-handed 310
Helix 53	AF8	B	324	339	Right-handed alpha
Helix 54	AF9	B	342	362	Right-handed alpha
Helix 55	AG1	B	378	389	Right-handed alpha
Helix 56	AG2	B	391	401	Right-handed alpha
Helix 57	AG3	B	416	448	Right-handed alpha
Helix 58	AG4	B	472	494	Right-handed alpha
Helix 59	AG5	B	494	504	Right-handed alpha
Helix 60	AG6	B	517	525	Right-handed alpha
Helix 61	AG7	B	529	540	Right-handed alpha
Helix 62	AG8	B	544	557	Right-handed alpha
Helix 63	AG9	B	592	599	Right-handed alpha
Helix 64	AH1	B	602	611	Right-handed alpha
Helix 65	AH2	B	614	621	Right-handed alpha
Helix 66	AH3	B	641	645	Right-handed 310
Helix 67	AH4	B	646	663	Right-handed alpha
Helix 68	AH5	B	685	697	Right-handed alpha
Helix 69	AH6	B	697	708	Right-handed alpha
Helix 70	AH7	B	715	723	Right-handed alpha
Helix 71	AH8	B	724	726	Right-handed 310
Helix 72	AH9	B	737	747	Right-handed alpha
Helix 73	AI1	B	752	754	Right-handed 310
Helix 74	AI2	B	768	826	Right-handed alpha
Helix 75	AI3	B	827	833	Right-handed alpha
Helix 76	AI4	B	841	843	Right-handed 310
Helix 77	AI5	B	844	943	Right-handed alpha
Helix 78	AI6	C	43	56	Right-handed alpha
Helix 79	AI7	C	68	76	Right-handed alpha
Helix 80	AI8	C	81	90	Right-handed alpha
Helix 81	AI9	C	95	100	Right-handed alpha
Helix 82	AJ1	C	103	116	Right-handed alpha
Helix 83	AJ2	C	122	131	Right-handed alpha
Helix 84	AJ3	C	132	134	Right-handed 310
Helix 85	AJ4	C	143	153	Right-handed alpha
Helix 86	AJ5	C	158	166	Right-handed alpha
Helix 87	AJ6	C	178	186	Right-handed alpha
Helix 88	AJ7	D	42	57	Right-handed alpha
Helix 89	AJ8	D	65	67	Right-handed 310
Helix 90	AJ9	D	68	77	Right-handed alpha
Helix 91	AK1	D	81	89	Right-handed alpha
Helix 92	AK2	D	94	98	Right-handed 310
Helix 93	AK3	D	103	118	Right-handed alpha
Helix 94	AK4	D	122	132	Right-handed alpha
Helix 95	AK5	D	143	152	Right-handed alpha
Helix 96	AK6	D	158	166	Right-handed alpha
Helix 97	AK7	D	177	187	Right-handed alpha
Helix 98	AK8	E	23	38	Right-handed alpha
Helix 99	AK9	E	47	55	Right-handed alpha
Helix 100	AL1	E	84	92	Right-handed alpha
Helix 101	AL2	E	96	107	Right-handed alpha
Helix 102	AL3	E	117	126	Right-handed alpha
Helix 103	AL4	E	132	140	Right-handed alpha
Helix 104	AL5	E	153	162	Right-handed alpha
Helix 105	AL6	F	28	38	Right-handed alpha
Helix 106	AL7	F	46	56	Right-handed alpha
Helix 107	AL8	F	61	66	Right-handed alpha
Helix 108	AL9	F	66	74	Right-handed alpha
Helix 109	AM1	F	80	91	Right-handed alpha
Helix 110	AM2	F	96	108	Right-handed alpha
Helix 111	AM3	F	116	127	Right-handed alpha
Helix 112	AM4	F	135	143	Right-handed alpha
Helix 113	AM5	F	152	161	Right-handed alpha

There are 17 sheets in PDB entry 9YP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	55	anti-parallel
Strand 3	A	58	63	anti-parallel
Strand 4	A	68	71	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	177	parallel
Strand 5	A	455	461	parallel
Strand 6	A	246	252	anti-parallel
Strand 7	A	258	265	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	373	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	409	412	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	580	anti-parallel
Strand 3	A	585	588	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	762	765	anti-parallel
Strand 3	A	756	758	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	46	55	anti-parallel
Strand 4	B	36	40	anti-parallel
Strand 5	B	77	78	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	177	parallel
Strand 5	B	455	461	parallel
Strand 6	B	246	252	anti-parallel
Strand 7	B	258	265	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	241	242	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	373	375	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	584	588	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	714	first strand
Strand 2	B	762	765	anti-parallel
Strand 3	B	756	758	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	101	102	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	142	first strand
Strand 2	C	175	177	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	175	176	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	150	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YP9