Analysis of interatomic Contacts of Structural Units in PDB entry:
9YPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YPE entry

There are 7 chains in PDB entry 9YPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 313
B
 PRO 105ASP 313
C
 MET 1ASP 313
D
 PRO 105ASP 313
E
 PRO 105ASP 313
F
 PRO 105ASP 313
G
 G 2 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 9YPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
90 94Right-handed 310
Helix 4
AA4
A
96 101Right-handed 310
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
124 138Right-handed alpha
Helix 7
AA7
A
157 177Right-handed alpha
Helix 8
AA8
A
181 192Right-handed alpha
Helix 9
AA9
A
195 200Right-handed alpha
Helix 10
AB1
A
209 215Right-handed alpha
Helix 11
AB2
A
216 233Right-handed alpha
Helix 12
AB3
A
236 248Right-handed alpha
Helix 13
AB4
A
252 256Right-handed 310
Helix 14
AB5
A
263 288Right-handed alpha
Helix 15
AB6
A
298 302Right-handed 310
Helix 16
AB7
B
107 120Right-handed alpha
Helix 17
AB8
B
124 138Right-handed alpha
Helix 18
AB9
B
157 177Right-handed alpha
Helix 19
AC1
B
181 192Right-handed alpha
Helix 20
AC2
B
194 200Right-handed alpha
Helix 21
AC3
B
209 215Right-handed alpha
Helix 22
AC4
B
216 233Right-handed alpha
Helix 23
AC5
B
237 248Right-handed alpha
Helix 24
AC6
B
252 256Right-handed 310
Helix 25
AC7
B
263 283Right-handed alpha
Helix 26
AC8
B
298 302Right-handed 310
Helix 27
AC9
C
55 60Right-handed alpha
Helix 28
AD1
C
90 94Right-handed 310
Helix 29
AD2
C
96 100Right-handed 310
Helix 30
AD3
C
107 120Right-handed alpha
Helix 31
AD4
C
124 138Right-handed alpha
Helix 32
AD5
C
138 143Right-handed alpha
Helix 33
AD6
C
157 177Right-handed alpha
Helix 34
AD7
C
181 192Right-handed alpha
Helix 35
AD8
C
193 200Right-handed alpha
Helix 36
AD9
C
209 215Right-handed alpha
Helix 37
AE1
C
215 232Right-handed alpha
Helix 38
AE2
C
237 248Right-handed alpha
Helix 39
AE3
C
263 289Right-handed alpha
Helix 40
AE4
C
298 302Right-handed 310
Helix 41
AE5
D
107 120Right-handed alpha
Helix 42
AE6
D
124 138Right-handed alpha
Helix 43
AE7
D
159 177Right-handed alpha
Helix 44
AE8
D
181 192Right-handed alpha
Helix 45
AE9
D
195 199Right-handed alpha
Helix 46
AF1
D
209 215Right-handed alpha
Helix 47
AF2
D
215 233Right-handed alpha
Helix 48
AF3
D
237 248Right-handed alpha
Helix 49
AF4
D
263 288Right-handed alpha
Helix 50
AF5
D
298 302Right-handed 310
Helix 51
AF6
E
107 120Right-handed alpha
Helix 52
AF7
E
124 138Right-handed alpha
Helix 53
AF8
E
138 143Right-handed alpha
Helix 54
AF9
E
157 177Right-handed alpha
Helix 55
AG1
E
181 193Right-handed alpha
Helix 56
AG2
E
194 197Right-handed 310
Helix 57
AG3
E
209 233Right-handed alpha
Helix 58
AG4
E
237 248Right-handed alpha
Helix 59
AG5
E
252 256Right-handed 310
Helix 60
AG6
E
263 288Right-handed alpha
Helix 61
AG7
E
298 302Right-handed 310
Helix 62
AG8
F
107 120Right-handed alpha
Helix 63
AG9
F
124 138Right-handed alpha
Helix 64
AH1
F
138 143Right-handed alpha
Helix 65
AH2
F
158 177Right-handed alpha
Helix 66
AH3
F
181 193Right-handed alpha
Helix 67
AH4
F
195 199Right-handed alpha
Helix 68
AH5
F
209 215Right-handed alpha
Helix 69
AH6
F
215 232Right-handed alpha
Helix 70
AH7
F
236 248Right-handed alpha
Helix 71
AH8
F
252 256Right-handed 310
Helix 72
AH9
F
263 287Right-handed alpha
Helix 73
AI1
F
298 302Right-handed 310
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There are 4 sheets in PDB entry 9YPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 22first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
78 88parallel
Strand 5
A
65 75anti-parallel
Strand 6
A
13 22anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 23first strand
Strand 2
C
34 39anti-parallel
Strand 3
C
44 49anti-parallel
Strand 4
C
80 88parallel
Strand 5
C
64 73anti-parallel
Strand 6
C
17 23anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 201first strand
Strand 2
D
207 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
200 201first strand
Strand 2
F
207 208anti-parallel
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