Analysis of interatomic Contacts of Structural Units in PDB entry:
9YPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YPM entry

There are 8 chains in PDB entry 9YPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -12LEU 225
B
 PRO -1LEU 225
C
 HIS 0LEU 225
D
 SER -12LEU 225
J
 LEU 300ARG 302
K
 LEU 303ARG 305
L
 LEU 306ARG 308
M
 LEU 309ARG 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9YPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-12 -4Right-handed alpha
Helix 2
AA2
A
3 26Right-handed alpha
Helix 3
AA3
A
26 35Right-handed alpha
Helix 4
AA4
A
39 72Right-handed alpha
Helix 5
AA5
A
72 88Right-handed alpha
Helix 6
AA6
A
91 101Right-handed alpha
Helix 7
AA7
A
103 107Right-handed 310
Helix 8
AA8
A
108 112Right-handed 310
Helix 9
AA9
A
113 131Right-handed alpha
Helix 10
AB1
A
132 162Right-handed alpha
Helix 11
AB2
A
163 165Right-handed 310
Helix 12
AB3
A
166 180Right-handed alpha
Helix 13
AB4
A
180 190Right-handed alpha
Helix 14
AB5
A
195 225Right-handed alpha
Helix 15
AB6
B
3 26Right-handed alpha
Helix 16
AB7
B
26 35Right-handed alpha
Helix 17
AB8
B
39 69Right-handed alpha
Helix 18
AB9
B
72 87Right-handed alpha
Helix 19
AC1
B
88 92Right-handed 310
Helix 20
AC2
B
93 101Right-handed alpha
Helix 21
AC3
B
103 107Right-handed 310
Helix 22
AC4
B
108 112Right-handed 310
Helix 23
AC5
B
113 131Right-handed alpha
Helix 24
AC6
B
132 162Right-handed alpha
Helix 25
AC7
B
163 165Right-handed 310
Helix 26
AC8
B
166 179Right-handed alpha
Helix 27
AC9
B
180 190Right-handed alpha
Helix 28
AD1
B
195 225Right-handed alpha
Helix 29
AD2
C
3 26Right-handed alpha
Helix 30
AD3
C
26 35Right-handed alpha
Helix 31
AD4
C
39 72Right-handed alpha
Helix 32
AD5
C
72 87Right-handed alpha
Helix 33
AD6
C
93 101Right-handed alpha
Helix 34
AD7
C
103 107Right-handed 310
Helix 35
AD8
C
108 112Right-handed 310
Helix 36
AD9
C
113 131Right-handed alpha
Helix 37
AE1
C
132 162Right-handed alpha
Helix 38
AE2
C
163 165Right-handed 310
Helix 39
AE3
C
166 179Right-handed alpha
Helix 40
AE4
C
180 189Right-handed alpha
Helix 41
AE5
C
190 192Right-handed 310
Helix 42
AE6
C
195 225Right-handed alpha
Helix 43
AE7
D
-11 -4Right-handed alpha
Helix 44
AE8
D
3 26Right-handed alpha
Helix 45
AE9
D
26 35Right-handed alpha
Helix 46
AF1
D
39 72Right-handed alpha
Helix 47
AF2
D
72 87Right-handed alpha
Helix 48
AF3
D
89 101Right-handed alpha
Helix 49
AF4
D
108 112Right-handed 310
Helix 50
AF5
D
113 131Right-handed alpha
Helix 51
AF6
D
132 162Right-handed alpha
Helix 52
AF7
D
163 165Right-handed 310
Helix 53
AF8
D
166 180Right-handed alpha
Helix 54
AF9
D
180 190Right-handed alpha
Helix 55
AG1
D
195 225Right-handed alpha
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There are no sheets in PDB entry 9YPM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il