Analysis of interatomic Contacts of Structural Units in PDB entry:
9YQ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YQ6 entry

There are 10 chains in PDB entry 9YQ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	SER 438
F	ARG 1	SER 432
B	GLU 1	PRO 121
C	ASP 1	LYS 111
G	GLU 1	PRO 121
H	ASP 1	LYS 111
D	GLN 1	SER 123
E	GLU 1	LYS 107
I	GLN 1	SER 123
J	GLU 1	LYS 107

There are 22 helices in PDB entry 9YQ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	23	Right-handed alpha
Helix 2	AA2	A	114	118	Right-handed 310
Helix 3	AA3	A	141	148	Right-handed alpha
Helix 4	AA4	A	225	233	Right-handed alpha
Helix 5	AA5	A	234	239	Right-handed 310
Helix 6	AA6	F	12	17	Right-handed alpha
Helix 7	AA7	F	108	112	Right-handed 310
Helix 8	AA8	F	135	142	Right-handed alpha
Helix 9	AA9	F	165	169	Right-handed 310
Helix 10	AB1	F	219	227	Right-handed alpha
Helix 11	AB2	F	228	233	Right-handed 310
Helix 12	AB3	B	28	32	Right-handed 310
Helix 13	AB4	C	84	88	Right-handed 310
Helix 14	AB5	G	62	65	Right-handed 310
Helix 15	AB6	G	87	91	Right-handed 310
Helix 16	AB7	H	84	88	Right-handed 310
Helix 17	AB8	D	63	66	Right-handed 310
Helix 18	AB9	D	88	92	Right-handed 310
Helix 19	AC1	E	79	83	Right-handed 310
Helix 20	AC2	I	63	66	Right-handed 310
Helix 21	AC3	I	88	92	Right-handed 310
Helix 22	AC4	J	79	83	Right-handed 310

There are 39 sheets in PDB entry 9YQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	394	404	anti-parallel
Strand 3	A	407	418	anti-parallel
Strand 4	A	423	432	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	435	438	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	F	43	44	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	F	38	39	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	64	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	87	96	anti-parallel
Strand 4	A	104	112	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	127	first strand
Strand 2	A	130	136	anti-parallel
Strand 3	A	154	159	anti-parallel
Strand 4	A	165	170	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	258	264	parallel
Strand 3	A	242	252	anti-parallel
Strand 4	A	197	206	anti-parallel
Strand 5	A	181	186	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	258	264	parallel
Strand 3	A	242	252	anti-parallel
Strand 4	A	197	206	anti-parallel
Strand 5	A	192	194	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	300	304	anti-parallel
Strand 4	A	312	316	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	349	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	371	376	anti-parallel
Strand 4	A	381	386	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	10	first strand
Strand 2	F	388	398	anti-parallel
Strand 3	F	401	412	anti-parallel
Strand 4	F	417	426	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	26	first strand
Strand 2	F	429	432	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	58	first strand
Strand 2	F	63	70	anti-parallel
Strand 3	F	81	90	anti-parallel
Strand 4	F	98	106	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	121	first strand
Strand 2	F	124	130	anti-parallel
Strand 3	F	148	153	anti-parallel
Strand 4	F	159	164	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	252	258	parallel
Strand 3	F	236	246	anti-parallel
Strand 4	F	191	200	anti-parallel
Strand 5	F	175	180	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	252	258	parallel
Strand 3	F	236	246	anti-parallel
Strand 4	F	191	200	anti-parallel
Strand 5	F	186	188	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	275	first strand
Strand 2	F	278	283	anti-parallel
Strand 3	F	294	298	anti-parallel
Strand 4	F	306	310	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	341	343	first strand
Strand 2	F	351	356	anti-parallel
Strand 3	F	365	370	anti-parallel
Strand 4	F	375	380	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	69	73	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	92	99	anti-parallel
Strand 5	B	108	111	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	92	99	anti-parallel
Strand 5	B	115	117	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	106	110	parallel
Strand 3	C	89	95	anti-parallel
Strand 4	C	38	43	anti-parallel
Strand 5	C	50	54	anti-parallel
Strand 6	C	58	59	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	44	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	108	111	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	75	80	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	106	109	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	38	43	anti-parallel
Strand 5	H	49	54	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	117	121	parallel
Strand 3	D	93	101	anti-parallel
Strand 4	D	34	41	anti-parallel
Strand 5	D	48	54	anti-parallel
Strand 6	D	59	61	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	117	121	parallel
Strand 3	D	93	101	anti-parallel
Strand 4	D	110	113	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	69	74	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	117	121	parallel
Strand 3	I	93	102	anti-parallel
Strand 4	I	35	41	anti-parallel
Strand 5	I	48	54	anti-parallel
Strand 6	I	59	61	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	117	121	parallel
Strand 3	I	93	102	anti-parallel
Strand 4	I	108	109	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	67	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YQ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YQ6