Analysis of interatomic Contacts of Structural Units in PDB entry:
9YQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YQ8 entry

There are 5 chains in PDB entry 9YQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	PHE 84	LYS 427
A	SER 1546	TYR 2196
L	VAL 171	ASP 318
H	ILE 321	PHE 577
B	ALA 1	THR 674

There are 29 helices in PDB entry 9YQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	92	96	Right-handed 310
Helix 2	AA2	E	235	240	Right-handed 310
Helix 3	AA3	E	306	313	Right-handed alpha
Helix 4	AA4	E	346	354	Right-handed alpha
Helix 5	AA5	E	418	426	Right-handed alpha
Helix 6	AA6	A	1607	1612	Right-handed alpha
Helix 7	AA7	A	1650	1654	Right-handed 310
Helix 8	AA8	A	1663	1667	Right-handed 310
Helix 9	AA9	A	1707	1712	Right-handed alpha
Helix 10	AB1	A	1713	1715	Right-handed 310
Helix 11	AB2	A	1860	1866	Right-handed alpha
Helix 12	AB3	A	1891	1893	Right-handed 310
Helix 13	AB4	A	1905	1909	Right-handed 310
Helix 14	AB5	A	2069	2073	Right-handed 310
Helix 15	AB6	A	2114	2118	Right-handed 310
Helix 16	AB7	L	172	176	Right-handed 310
Helix 17	AB8	L	199	204	Right-handed alpha
Helix 18	AB9	L	308	318	Right-handed alpha
Helix 19	AC1	H	361	366	Right-handed alpha
Helix 20	AC2	H	442	450	Right-handed alpha
Helix 21	AC3	H	489	495	Right-handed alpha
Helix 22	AC4	H	569	575	Right-handed alpha
Helix 23	AC5	B	105	113	Right-handed 310
Helix 24	AC6	B	149	156	Right-handed alpha
Helix 25	AC7	B	284	290	Right-handed alpha
Helix 26	AC8	B	301	305	Right-handed 310
Helix 27	AC9	B	482	488	Right-handed alpha
Helix 28	AD1	B	530	537	Right-handed alpha
Helix 29	AD2	B	551	557	Right-handed alpha

There are 29 sheets in PDB entry 9YQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	116	first strand
Strand 2	E	125	126	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	263	first strand
Strand 2	E	245	248	anti-parallel
Strand 3	E	209	213	anti-parallel
Strand 4	E	219	225	anti-parallel
Strand 5	E	230	233	anti-parallel
Strand 6	E	284	288	anti-parallel
Strand 7	E	265	269	anti-parallel
Strand 8	B	667	668	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	320	323	anti-parallel
Strand 3	E	382	387	anti-parallel
Strand 4	E	390	399	anti-parallel
Strand 5	E	410	414	anti-parallel
Strand 6	E	362	365	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1589	1594	first strand
Strand 2	A	1552	1561	anti-parallel
Strand 3	A	1627	1633	parallel
Strand 4	A	1677	1683	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1622	1623	first strand
Strand 2	A	1722	1723	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1701	1702	first strand
Strand 2	A	1718	1719	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1739	1744	first strand
Strand 2	A	1797	1803	parallel
Strand 3	A	1842	1847	anti-parallel
Strand 4	A	1820	1822	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1746	1747	first strand
Strand 2	A	1778	1779	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1791	1793	first strand
Strand 2	A	1873	1875	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1835	1836	first strand
Strand 2	A	1812	1816	anti-parallel
Strand 3	A	1856	1858	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1895	1897	first strand
Strand 2	A	1935	1938	anti-parallel
Strand 3	A	2012	2019	anti-parallel
Strand 4	A	1964	1970	anti-parallel
Strand 5	A	1977	1978	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1920	1921	first strand
Strand 2	A	2025	2026	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2008	2009	first strand
Strand 2	A	1943	1947	anti-parallel
Strand 3	A	2031	2034	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2055	2056	first strand
Strand 2	A	2095	2098	anti-parallel
Strand 3	A	2172	2177	anti-parallel
Strand 4	A	2124	2130	anti-parallel
Strand 5	A	2150	2151	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2161	2163	first strand
Strand 2	A	2103	2109	anti-parallel
Strand 3	A	2189	2194	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	230	232	first strand
Strand 2	L	240	242	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	335	337	first strand
Strand 2	H	349	352	anti-parallel
Strand 3	H	357	360	anti-parallel
Strand 4	H	421	424	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	456	457	first strand
Strand 2	H	484	485	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	505	507	first strand
Strand 2	H	559	561	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	529	533	first strand
Strand 2	H	538	543	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	3	9	anti-parallel
Strand 3	B	69	74	parallel
Strand 4	B	120	124	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	160	165	parallel
Strand 3	B	141	144	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	188	first strand
Strand 2	B	225	232	parallel
Strand 3	B	264	270	anti-parallel
Strand 4	B	249	250	anti-parallel
Strand 5	B	253	254	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	296	298	parallel
Strand 3	B	276	278	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	371	first strand
Strand 2	B	321	333	anti-parallel
Strand 3	B	402	406	parallel
Strand 4	B	454	455	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	397	first strand
Strand 2	B	492	497	parallel
Strand 3	B	473	475	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	519	first strand
Strand 2	B	581	585	parallel
Strand 3	B	621	624	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	575	first strand
Strand 2	B	651	654	parallel
Strand 3	B	631	633	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	598	first strand
Strand 2	B	635	637	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YQ8