Analysis of interatomic Contacts of Structural Units in PDB entry:
9YQ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YQ9 entry

There are 4 chains in PDB entry 9YQ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ASP 399
B	MET 1	ASP 399
C	HIS 0	ASP 399
D	GLY 2	ASP 399

There are 58 helices in PDB entry 9YQ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	36	48	Right-handed alpha
Helix 3	AA3	A	63	75	Right-handed alpha
Helix 4	AA4	A	89	99	Right-handed alpha
Helix 5	AA5	A	121	132	Right-handed alpha
Helix 6	AA6	A	144	157	Right-handed alpha
Helix 7	AA7	A	186	193	Right-handed alpha
Helix 8	AA8	A	232	239	Right-handed alpha
Helix 9	AA9	A	253	267	Right-handed alpha
Helix 10	AB1	A	282	291	Right-handed alpha
Helix 11	AB2	A	330	338	Right-handed alpha
Helix 12	AB3	A	340	360	Right-handed alpha
Helix 13	AB4	A	371	373	Right-handed 310
Helix 14	AB5	A	374	385	Right-handed alpha
Helix 15	AB6	B	11	23	Right-handed alpha
Helix 16	AB7	B	36	48	Right-handed alpha
Helix 17	AB8	B	63	75	Right-handed alpha
Helix 18	AB9	B	89	99	Right-handed alpha
Helix 19	AC1	B	113	120	Right-handed alpha
Helix 20	AC2	B	121	132	Right-handed alpha
Helix 21	AC3	B	144	157	Right-handed alpha
Helix 22	AC4	B	183	192	Right-handed alpha
Helix 23	AC5	B	232	240	Right-handed alpha
Helix 24	AC6	B	253	267	Right-handed alpha
Helix 25	AC7	B	282	291	Right-handed alpha
Helix 26	AC8	B	293	301	Right-handed 310
Helix 27	AC9	B	330	338	Right-handed alpha
Helix 28	AD1	B	340	359	Right-handed alpha
Helix 29	AD2	B	371	373	Right-handed 310
Helix 30	AD3	B	374	386	Right-handed alpha
Helix 31	AD4	C	11	23	Right-handed alpha
Helix 32	AD5	C	36	47	Right-handed alpha
Helix 33	AD6	C	63	75	Right-handed alpha
Helix 34	AD7	C	89	99	Right-handed alpha
Helix 35	AD8	C	121	131	Right-handed alpha
Helix 36	AD9	C	144	157	Right-handed alpha
Helix 37	AE1	C	183	193	Right-handed alpha
Helix 38	AE2	C	232	240	Right-handed alpha
Helix 39	AE3	C	253	267	Right-handed alpha
Helix 40	AE4	C	282	291	Right-handed alpha
Helix 41	AE5	C	293	301	Right-handed 310
Helix 42	AE6	C	330	338	Right-handed alpha
Helix 43	AE7	C	340	359	Right-handed alpha
Helix 44	AE8	C	371	373	Right-handed 310
Helix 45	AE9	C	374	385	Right-handed alpha
Helix 46	AF1	D	10	23	Right-handed alpha
Helix 47	AF2	D	36	48	Right-handed alpha
Helix 48	AF3	D	63	75	Right-handed alpha
Helix 49	AF4	D	90	99	Right-handed alpha
Helix 50	AF5	D	122	132	Right-handed alpha
Helix 51	AF6	D	144	157	Right-handed alpha
Helix 52	AF7	D	232	240	Right-handed alpha
Helix 53	AF8	D	253	265	Right-handed alpha
Helix 54	AF9	D	282	291	Right-handed alpha
Helix 55	AG1	D	329	338	Right-handed alpha
Helix 56	AG2	D	340	360	Right-handed alpha
Helix 57	AG3	D	371	373	Right-handed 310
Helix 58	AG4	D	374	386	Right-handed alpha

There are 16 sheets in PDB entry 9YQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	58	first strand
Strand 2	A	29	34	parallel
Strand 3	A	3	7	parallel
Strand 4	A	78	81	parallel
Strand 5	A	101	104	parallel
Strand 6	A	134	137	parallel
Strand 7	A	366	369	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	206	first strand
Strand 2	A	195	199	anti-parallel
Strand 3	A	245	251	anti-parallel
Strand 4	A	221	227	anti-parallel
Strand 5	A	212	217	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	206	first strand
Strand 2	A	195	199	anti-parallel
Strand 3	A	245	251	anti-parallel
Strand 4	A	160	169	parallel
Strand 5	A	304	315	anti-parallel
Strand 6	A	318	329	anti-parallel
Strand 7	A	389	392	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	279	281	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	58	first strand
Strand 2	B	29	34	parallel
Strand 3	B	3	7	parallel
Strand 4	B	78	81	parallel
Strand 5	B	101	104	parallel
Strand 6	B	134	137	parallel
Strand 7	B	366	369	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	206	first strand
Strand 2	B	195	199	anti-parallel
Strand 3	B	245	251	anti-parallel
Strand 4	B	221	227	anti-parallel
Strand 5	B	212	217	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	206	first strand
Strand 2	B	195	199	anti-parallel
Strand 3	B	245	251	anti-parallel
Strand 4	B	160	170	parallel
Strand 5	B	304	315	anti-parallel
Strand 6	B	318	329	anti-parallel
Strand 7	B	389	392	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	279	281	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	58	first strand
Strand 2	C	29	34	parallel
Strand 3	C	3	7	parallel
Strand 4	C	78	81	parallel
Strand 5	C	101	104	parallel
Strand 6	C	134	137	parallel
Strand 7	C	366	369	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	205	first strand
Strand 2	C	196	199	anti-parallel
Strand 3	C	245	251	anti-parallel
Strand 4	C	221	227	anti-parallel
Strand 5	C	212	217	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	205	first strand
Strand 2	C	196	199	anti-parallel
Strand 3	C	245	251	anti-parallel
Strand 4	C	160	170	parallel
Strand 5	C	304	315	anti-parallel
Strand 6	C	318	329	anti-parallel
Strand 7	C	389	392	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	279	281	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	58	first strand
Strand 2	D	29	34	parallel
Strand 3	D	3	7	parallel
Strand 4	D	78	81	parallel
Strand 5	D	101	104	parallel
Strand 6	D	134	137	parallel
Strand 7	D	366	369	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	198	199	anti-parallel
Strand 3	D	245	251	anti-parallel
Strand 4	D	221	227	anti-parallel
Strand 5	D	212	217	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	198	199	anti-parallel
Strand 3	D	245	251	anti-parallel
Strand 4	D	160	170	parallel
Strand 5	D	305	315	anti-parallel
Strand 6	D	318	328	anti-parallel
Strand 7	D	389	392	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	280	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YQ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YQ9