Analysis of interatomic Contacts of Structural Units in PDB entry:
9YQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YQQ entry

There is 1 chain in PDB entry 9YQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1599LEU 3746
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9YQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1682 1688Right-handed 310
Helix 2
AA2
A
1708 1713Right-handed alpha
Helix 3
AA3
A
1872 1886Right-handed alpha
Helix 4
AA4
A
2053 2068Right-handed alpha
Helix 5
AA5
A
2162 2167Right-handed alpha
Helix 6
AA6
A
2205 2219Right-handed alpha
Helix 7
AA7
A
2392 2411Right-handed alpha
Helix 8
AA8
A
2582 2587Right-handed alpha
Helix 9
AA9
A
2596 2600Right-handed 310
Helix 10
AB1
A
2611 2615Right-handed 310
Helix 11
AB2
A
3067 3074Right-handed 310
Helix 12
AB3
A
3131 3149Right-handed alpha
Helix 13
AB4
A
3228 3233Right-handed alpha
Helix 14
AB5
A
3274 3285Right-handed alpha
Helix 15
AB6
A
3290 3295Right-handed alpha
Helix 16
AB7
A
3300 3309Right-handed alpha
Helix 17
AB8
A
3311 3315Right-handed 310
Helix 18
AB9
A
3361 3369Right-handed alpha
Helix 19
AC1
A
3393 3417Right-handed alpha
Helix 20
AC2
A
3613 3624Right-handed alpha
Helix 21
AC3
A
3715 3729Right-handed alpha
Helix 22
AC4
A
3730 3746Right-handed alpha
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There are 27 sheets in PDB entry 9YQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1602 1611first strand
Strand 2
A
1620 1630anti-parallel
Strand 3
A
1638 1651anti-parallel
Strand 4
A
1670 1676anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1662 1664first strand
Strand 2
A
1703 1705anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1764 1768first strand
Strand 2
A
1775 1783anti-parallel
Strand 3
A
1803 1820anti-parallel
Strand 4
A
1830 1845anti-parallel
Strand 5
A
1857 1863anti-parallel
Strand 6
A
1937 1942parallel
Strand 7
A
1978 1983anti-parallel
Strand 8
A
1989 1995anti-parallel
Strand 9
A
2028 2034anti-parallel
Strand 10
A
2039 2045anti-parallel
Strand 11
A
2104 2109parallel
Strand 12
A
2126 2140anti-parallel
Strand 13
A
2144 2160anti-parallel
Strand 14
A
2171 2174anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1787 1792first strand
Strand 2
A
1803 1820anti-parallel
Strand 3
A
1830 1845anti-parallel
Strand 4
A
1857 1863anti-parallel
Strand 5
A
1937 1942parallel
Strand 6
A
1978 1983anti-parallel
Strand 7
A
1989 1995anti-parallel
Strand 8
A
2028 2034anti-parallel
Strand 9
A
2039 2045anti-parallel
Strand 10
A
2104 2109parallel
Strand 11
A
2126 2140anti-parallel
Strand 12
A
2144 2160anti-parallel
Strand 13
A
2178 2186anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1868 1871first strand
Strand 2
A
1947 1950parallel
Strand 3
A
1968 1971anti-parallel
Strand 4
A
2001 2002anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2195 2197first strand
Strand 2
A
2278 2289parallel
Strand 3
A
2296 2308anti-parallel
Strand 4
A
2325 2329anti-parallel
Strand 5
A
2336 2338anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2200 2204first strand
Strand 2
A
2278 2289parallel
Strand 3
A
2296 2308anti-parallel
Strand 4
A
2319 2323anti-parallel
Strand 5
A
2350 2354anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2342 2343first strand
Strand 2
A
2347 2348anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2442 2444first strand
Strand 2
A
2461 2466anti-parallel
Strand 3
A
2424 2428anti-parallel
Strand 4
A
2536 2542parallel
Strand 5
A
2525 2533anti-parallel
Strand 6
A
2509 2514anti-parallel
Strand 7
A
2650 2651parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2454 2456first strand
Strand 2
A
2434 2438anti-parallel
Strand 3
A
2490 2493anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2578 2580first strand
Strand 2
A
2545 2549anti-parallel
Strand 3
A
2662 2667parallel
Strand 4
A
2639 2645anti-parallel
Strand 5
A
2621 2625anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2567 2573first strand
Strand 2
A
2555 2560anti-parallel
Strand 3
A
2590 2594anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2698 2700first strand
Strand 2
A
2670 2674anti-parallel
Strand 3
A
2763 2769parallel
Strand 4
A
2750 2760anti-parallel
Strand 5
A
2736 2742anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2691 2693first strand
Strand 2
A
2680 2684anti-parallel
Strand 3
A
2709 2718anti-parallel
Strand 4
A
2721 2729anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2801 2803first strand
Strand 2
A
2772 2776anti-parallel
Strand 3
A
2864 2870parallel
Strand 4
A
2848 2857anti-parallel
Strand 5
A
2837 2843anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2790 2793first strand
Strand 2
A
2782 2785anti-parallel
Strand 3
A
2816 2820anti-parallel
Strand 4
A
2828 2829anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2905 2908first strand
Strand 2
A
2872 2876anti-parallel
Strand 3
A
2963 2968parallel
Strand 4
A
2953 2958anti-parallel
Strand 5
A
2941 2942anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2899 2900first strand
Strand 2
A
2882 2887anti-parallel
Strand 3
A
2917 2922anti-parallel
Strand 4
A
2932 2933anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3006 3008first strand
Strand 2
A
2978 2980anti-parallel
Strand 3
A
3059 3065parallel
Strand 4
A
3048 3056anti-parallel
Strand 5
A
3037 3042anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3000 3001first strand
Strand 2
A
2988 2992anti-parallel
Strand 3
A
3020 3023anti-parallel
Strand 4
A
3028 3031anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3094 3095first strand
Strand 2
A
3108 3113anti-parallel
Strand 3
A
3206 3211anti-parallel
Strand 4
A
3220 3222anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3128 3129first strand
Strand 2
A
3118 3121anti-parallel
Strand 3
A
3177 3182anti-parallel
Strand 4
A
3170 3171anti-parallel
Strand 5
A
3160 3163anti-parallel
Strand 6
A
3153 3157anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3188 3190first strand
Strand 2
A
3199 3203anti-parallel
Strand 3
A
3242 3248anti-parallel
Strand 4
A
3257 3264anti-parallel
Strand 5
A
3328 3330parallel
Strand 6
A
3385 3387anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3188 3190first strand
Strand 2
A
3199 3203anti-parallel
Strand 3
A
3242 3248anti-parallel
Strand 4
A
3257 3264anti-parallel
Strand 5
A
3324 3325parallel
Strand 6
A
3390 3391anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3271 3273first strand
Strand 2
A
3336 3340parallel
Strand 3
A
3375 3379anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3632 3637first strand
Strand 2
A
3644 3649anti-parallel
Strand 3
A
3652 3658anti-parallel
Strand 4
A
3665 3672anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3681 3682first strand
Strand 2
A
3686 3691anti-parallel
Strand 3
A
3707 3712anti-parallel
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