Analysis of interatomic Contacts of Structural Units in PDB entry:
9YRC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YRC entry

There are 8 chains in PDB entry 9YRC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 201	ARG 766
B	GLU 200	SER 775
C	GLU 200	GLY 767
D	VAL 201	SER 775
E	GLY 202	SER 775
F	VAL 201	SER 462
G	VAL 105	THR 558
H	LYS 255	ILE 258

There are175 helices in PDB entry 9YRC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	219	Right-handed alpha
Helix 2	AA2	A	221	226	Right-handed alpha
Helix 3	AA3	A	250	256	Right-handed alpha
Helix 4	AA4	A	258	263	Right-handed alpha
Helix 5	AA5	A	270	275	Right-handed alpha
Helix 6	AA6	A	276	278	Right-handed 310
Helix 7	AA7	A	279	291	Right-handed alpha
Helix 8	AA8	A	318	334	Right-handed alpha
Helix 9	AA9	A	373	385	Right-handed alpha
Helix 10	AB1	A	395	402	Right-handed alpha
Helix 11	AB2	A	407	426	Right-handed alpha
Helix 12	AB3	A	438	444	Right-handed alpha
Helix 13	AB4	A	448	459	Right-handed alpha
Helix 14	AB5	A	475	479	Right-handed 310
Helix 15	AB6	A	482	499	Right-handed alpha
Helix 16	AB7	A	499	507	Right-handed alpha
Helix 17	AB8	A	523	535	Right-handed alpha
Helix 18	AB9	A	544	548	Right-handed 310
Helix 19	AC1	A	553	569	Right-handed alpha
Helix 20	AC2	A	578	582	Right-handed 310
Helix 21	AC3	A	587	592	Right-handed alpha
Helix 22	AC4	A	596	611	Right-handed alpha
Helix 23	AC5	A	625	629	Right-handed 310
Helix 24	AC6	A	630	635	Right-handed alpha
Helix 25	AC7	A	649	661	Right-handed alpha
Helix 26	AC8	A	671	679	Right-handed alpha
Helix 27	AC9	A	683	714	Right-handed alpha
Helix 28	AD1	A	732	742	Right-handed alpha
Helix 29	AD2	A	748	766	Right-handed alpha
Helix 30	AD3	B	202	206	Right-handed 310
Helix 31	AD4	B	210	221	Right-handed alpha
Helix 32	AD5	B	221	226	Right-handed alpha
Helix 33	AD6	B	226	233	Right-handed alpha
Helix 34	AD7	B	250	261	Right-handed alpha
Helix 35	AD8	B	270	275	Right-handed 310
Helix 36	AD9	B	280	296	Right-handed alpha
Helix 37	AE1	B	305	309	Right-handed 310
Helix 38	AE2	B	318	333	Right-handed alpha
Helix 39	AE3	B	349	353	Right-handed 310
Helix 40	AE4	B	354	358	Right-handed 310
Helix 41	AE5	B	373	385	Right-handed alpha
Helix 42	AE6	B	395	403	Right-handed alpha
Helix 43	AE7	B	408	425	Right-handed alpha
Helix 44	AE8	B	426	430	Right-handed 310
Helix 45	AE9	B	438	445	Right-handed alpha
Helix 46	AF1	B	448	459	Right-handed alpha
Helix 47	AF2	B	475	479	Right-handed 310
Helix 48	AF3	B	482	499	Right-handed alpha
Helix 49	AF4	B	499	507	Right-handed alpha
Helix 50	AF5	B	523	535	Right-handed alpha
Helix 51	AF6	B	544	548	Right-handed 310
Helix 52	AF7	B	553	569	Right-handed alpha
Helix 53	AF8	B	578	582	Right-handed 310
Helix 54	AF9	B	591	609	Right-handed alpha
Helix 55	AG1	B	630	635	Right-handed 310
Helix 56	AG2	B	649	661	Right-handed alpha
Helix 57	AG3	B	671	679	Right-handed alpha
Helix 58	AG4	B	683	714	Right-handed alpha
Helix 59	AG5	B	732	743	Right-handed alpha
Helix 60	AG6	B	748	767	Right-handed alpha
Helix 61	AG7	C	202	206	Right-handed 310
Helix 62	AG8	C	209	226	Right-handed alpha
Helix 63	AG9	C	226	234	Right-handed alpha
Helix 64	AH1	C	250	262	Right-handed alpha
Helix 65	AH2	C	270	274	Right-handed 310
Helix 66	AH3	C	281	296	Right-handed alpha
Helix 67	AH4	C	305	310	Right-handed alpha
Helix 68	AH5	C	318	334	Right-handed alpha
Helix 69	AH6	C	349	353	Right-handed 310
Helix 70	AH7	C	354	358	Right-handed 310
Helix 71	AH8	C	373	385	Right-handed alpha
Helix 72	AH9	C	395	403	Right-handed alpha
Helix 73	AI1	C	408	428	Right-handed alpha
Helix 74	AI2	C	438	444	Right-handed alpha
Helix 75	AI3	C	448	459	Right-handed alpha
Helix 76	AI4	C	475	479	Right-handed 310
Helix 77	AI5	C	482	499	Right-handed alpha
Helix 78	AI6	C	499	507	Right-handed alpha
Helix 79	AI7	C	523	535	Right-handed alpha
Helix 80	AI8	C	553	569	Right-handed alpha
Helix 81	AI9	C	579	582	Right-handed 310
Helix 82	AJ1	C	595	609	Right-handed alpha
Helix 83	AJ2	C	649	661	Right-handed alpha
Helix 84	AJ3	C	671	679	Right-handed alpha
Helix 85	AJ4	C	683	709	Right-handed alpha
Helix 86	AJ5	C	732	740	Right-handed alpha
Helix 87	AJ6	C	748	767	Right-handed alpha
Helix 88	AJ7	D	202	206	Right-handed 310
Helix 89	AJ8	D	210	226	Right-handed alpha
Helix 90	AJ9	D	228	233	Right-handed alpha
Helix 91	AK1	D	251	262	Right-handed alpha
Helix 92	AK2	D	271	276	Right-handed alpha
Helix 93	AK3	D	280	296	Right-handed alpha
Helix 94	AK4	D	305	310	Right-handed alpha
Helix 95	AK5	D	318	333	Right-handed alpha
Helix 96	AK6	D	349	353	Right-handed 310
Helix 97	AK7	D	354	359	Right-handed 310
Helix 98	AK8	D	373	385	Right-handed alpha
Helix 99	AK9	D	395	403	Right-handed alpha
Helix 100	AL1	D	407	428	Right-handed alpha
Helix 101	AL2	D	438	444	Right-handed alpha
Helix 102	AL3	D	448	457	Right-handed alpha
Helix 103	AL4	D	461	465	Right-handed 310
Helix 104	AL5	D	475	479	Right-handed 310
Helix 105	AL6	D	482	499	Right-handed alpha
Helix 106	AL7	D	501	506	Right-handed alpha
Helix 107	AL8	D	523	531	Right-handed alpha
Helix 108	AL9	D	553	569	Right-handed alpha
Helix 109	AM1	D	579	582	Right-handed 310
Helix 110	AM2	D	595	609	Right-handed alpha
Helix 111	AM3	D	649	661	Right-handed alpha
Helix 112	AM4	D	671	679	Right-handed alpha
Helix 113	AM5	D	683	714	Right-handed alpha
Helix 114	AM6	D	732	741	Right-handed alpha
Helix 115	AM7	D	748	767	Right-handed alpha
Helix 116	AM8	E	209	220	Right-handed alpha
Helix 117	AM9	E	220	226	Right-handed alpha
Helix 118	AN1	E	227	234	Right-handed alpha
Helix 119	AN2	E	250	261	Right-handed alpha
Helix 120	AN3	E	270	277	Right-handed alpha
Helix 121	AN4	E	280	296	Right-handed alpha
Helix 122	AN5	E	305	310	Right-handed alpha
Helix 123	AN6	E	319	335	Right-handed alpha
Helix 124	AN7	E	354	359	Right-handed alpha
Helix 125	AN8	E	374	384	Right-handed alpha
Helix 126	AN9	E	396	402	Right-handed alpha
Helix 127	AO1	E	409	417	Right-handed alpha
Helix 128	AO2	E	420	425	Right-handed alpha
Helix 129	AO3	E	439	444	Right-handed alpha
Helix 130	AO4	E	448	450	Right-handed 310
Helix 131	AO5	E	451	459	Right-handed alpha
Helix 132	AO6	E	482	499	Right-handed alpha
Helix 133	AO7	E	500	503	Right-handed 310
Helix 134	AO8	E	523	536	Right-handed alpha
Helix 135	AO9	E	544	548	Right-handed alpha
Helix 136	AP1	E	553	570	Right-handed alpha
Helix 137	AP2	E	578	582	Right-handed 310
Helix 138	AP3	E	593	612	Right-handed alpha
Helix 139	AP4	E	625	629	Right-handed 310
Helix 140	AP5	E	630	635	Right-handed alpha
Helix 141	AP6	E	649	661	Right-handed alpha
Helix 142	AP7	E	671	679	Right-handed alpha
Helix 143	AP8	E	683	714	Right-handed alpha
Helix 144	AP9	E	732	743	Right-handed alpha
Helix 145	AQ1	E	748	766	Right-handed alpha
Helix 146	AQ2	F	209	220	Right-handed alpha
Helix 147	AQ3	F	220	226	Right-handed alpha
Helix 148	AQ4	F	226	233	Right-handed alpha
Helix 149	AQ5	F	250	262	Right-handed alpha
Helix 150	AQ6	F	271	277	Right-handed alpha
Helix 151	AQ7	F	280	295	Right-handed alpha
Helix 152	AQ8	F	306	309	Right-handed 310
Helix 153	AQ9	F	312	316	Right-handed 310
Helix 154	AR1	F	319	335	Right-handed alpha
Helix 155	AR2	F	336	340	Right-handed 310
Helix 156	AR3	F	349	353	Right-handed 310
Helix 157	AR4	F	354	359	Right-handed alpha
Helix 158	AR5	F	373	386	Right-handed alpha
Helix 159	AR6	F	395	403	Right-handed alpha
Helix 160	AR7	F	408	428	Right-handed alpha
Helix 161	AR8	F	438	445	Right-handed alpha
Helix 162	AR9	F	448	458	Right-handed alpha
Helix 163	AS1	G	108	115	Right-handed alpha
Helix 164	AS2	G	164	173	Right-handed alpha
Helix 165	AS3	G	230	245	Right-handed alpha
Helix 166	AS4	G	292	303	Right-handed alpha
Helix 167	AS5	G	337	351	Right-handed alpha
Helix 168	AS6	G	388	397	Right-handed alpha
Helix 169	AS7	G	484	495	Right-handed alpha
Helix 170	AS8	G	499	505	Right-handed alpha
Helix 171	AS9	G	506	515	Right-handed alpha
Helix 172	AT1	G	525	535	Right-handed alpha
Helix 173	AT2	G	536	545	Right-handed alpha
Helix 174	AT3	G	546	555	Right-handed alpha
Helix 175	AT4	I	22	32	Right-handed alpha

There are 16 sheets in PDB entry 9YRC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	572	576	parallel
Strand 3	A	617	623	parallel
Strand 4	A	513	517	parallel
Strand 5	A	641	644	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	240	244	parallel
Strand 3	B	341	347	parallel
Strand 4	B	299	303	parallel
Strand 5	B	265	269	parallel
Strand 6	G	203	204	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	572	576	parallel
Strand 3	B	617	623	parallel
Strand 4	B	514	517	parallel
Strand 5	B	641	644	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	269	first strand
Strand 2	C	299	303	parallel
Strand 3	C	342	347	parallel
Strand 4	C	240	244	parallel
Strand 5	C	365	368	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	542	first strand
Strand 2	C	572	577	parallel
Strand 3	C	617	623	parallel
Strand 4	C	513	517	parallel
Strand 5	C	641	644	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	368	first strand
Strand 2	D	240	244	parallel
Strand 3	D	341	347	parallel
Strand 4	D	299	304	parallel
Strand 5	D	265	270	parallel
Strand 6	G	136	137	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	543	first strand
Strand 2	D	572	577	parallel
Strand 3	D	617	623	parallel
Strand 4	D	513	517	parallel
Strand 5	D	641	644	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	302	first strand
Strand 2	E	342	346	parallel
Strand 3	E	240	244	parallel
Strand 4	E	365	368	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	516	517	first strand
Strand 2	E	643	644	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	543	first strand
Strand 2	E	572	577	parallel
Strand 3	E	618	620	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	243	first strand
Strand 2	F	342	346	parallel
Strand 3	F	300	304	parallel
Strand 4	F	268	270	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	163	first strand
Strand 2	G	220	221	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	40	41	first strand
Strand 2	G	449	457	anti-parallel
Strand 3	G	380	387	anti-parallel
Strand 4	G	368	374	anti-parallel
Strand 5	G	306	314	parallel
Strand 6	G	249	259	anti-parallel
Strand 7	G	265	274	anti-parallel
Strand 8	G	225	228	parallel
Strand 9	G	449	457	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	352	354	first strand
Strand 2	G	362	365	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	400	402	first strand
Strand 2	G	409	412	anti-parallel
Strand 3	G	443	444	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	425	429	first strand
Strand 2	G	435	439	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YRC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YRC