Analysis of interatomic Contacts of Structural Units in PDB entry:
9YRG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YRG entry

There are 6 chains in PDB entry 9YRG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LEU 943
B	SER 4	LEU 943
C	ALA 36	SER 187
D	ALA 36	SER 187
E	PHE 22	GLY 163
F	PHE 22	GLY 163

There are115 helices in PDB entry 9YRG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	13	Right-handed 310
Helix 2	AA2	A	19	26	Right-handed alpha
Helix 3	AA3	A	27	29	Right-handed 310
Helix 4	AA4	A	81	85	Right-handed 310
Helix 5	AA5	A	89	93	Right-handed 310
Helix 6	AA6	A	97	111	Right-handed alpha
Helix 7	AA7	A	135	142	Right-handed alpha
Helix 8	AA8	A	146	150	Right-handed 310
Helix 9	AA9	A	153	169	Right-handed alpha
Helix 10	AB1	A	183	201	Right-handed alpha
Helix 11	AB2	A	216	231	Right-handed alpha
Helix 12	AB3	A	269	273	Right-handed 310
Helix 13	AB4	A	283	290	Right-handed alpha
Helix 14	AB5	A	294	302	Right-handed alpha
Helix 15	AB6	A	306	310	Right-handed 310
Helix 16	AB7	A	324	339	Right-handed alpha
Helix 17	AB8	A	342	360	Right-handed alpha
Helix 18	AB9	A	378	389	Right-handed alpha
Helix 19	AC1	A	391	401	Right-handed alpha
Helix 20	AC2	A	405	409	Right-handed 310
Helix 21	AC3	A	416	448	Right-handed alpha
Helix 22	AC4	A	472	494	Right-handed alpha
Helix 23	AC5	A	494	505	Right-handed alpha
Helix 24	AC6	A	529	540	Right-handed alpha
Helix 25	AC7	A	544	557	Right-handed alpha
Helix 26	AC8	A	592	599	Right-handed alpha
Helix 27	AC9	A	602	611	Right-handed alpha
Helix 28	AD1	A	614	622	Right-handed alpha
Helix 29	AD2	A	646	662	Right-handed alpha
Helix 30	AD3	A	663	665	Right-handed 310
Helix 31	AD4	A	685	697	Right-handed alpha
Helix 32	AD5	A	697	707	Right-handed alpha
Helix 33	AD6	A	714	722	Right-handed alpha
Helix 34	AD7	A	726	730	Right-handed 310
Helix 35	AD8	A	737	749	Right-handed alpha
Helix 36	AD9	A	768	781	Right-handed alpha
Helix 37	AE1	A	781	825	Right-handed alpha
Helix 38	AE2	A	827	837	Right-handed alpha
Helix 39	AE3	A	838	840	Right-handed 310
Helix 40	AE4	A	844	943	Right-handed alpha
Helix 41	AE5	B	4	9	Right-handed 310
Helix 42	AE6	B	12	17	Right-handed alpha
Helix 43	AE7	B	19	29	Right-handed alpha
Helix 44	AE8	B	54	58	Right-handed 310
Helix 45	AE9	B	81	85	Right-handed 310
Helix 46	AF1	B	89	93	Right-handed 310
Helix 47	AF2	B	97	111	Right-handed alpha
Helix 48	AF3	B	135	142	Right-handed alpha
Helix 49	AF4	B	153	169	Right-handed alpha
Helix 50	AF5	B	183	196	Right-handed alpha
Helix 51	AF6	B	216	232	Right-handed alpha
Helix 52	AF7	B	270	275	Right-handed alpha
Helix 53	AF8	B	283	291	Right-handed alpha
Helix 54	AF9	B	295	302	Right-handed alpha
Helix 55	AG1	B	324	340	Right-handed alpha
Helix 56	AG2	B	342	362	Right-handed alpha
Helix 57	AG3	B	378	389	Right-handed alpha
Helix 58	AG4	B	391	401	Right-handed alpha
Helix 59	AG5	B	416	447	Right-handed alpha
Helix 60	AG6	B	472	492	Right-handed alpha
Helix 61	AG7	B	494	505	Right-handed alpha
Helix 62	AG8	B	517	526	Right-handed alpha
Helix 63	AG9	B	529	540	Right-handed alpha
Helix 64	AH1	B	544	557	Right-handed alpha
Helix 65	AH2	B	592	598	Right-handed 310
Helix 66	AH3	B	602	612	Right-handed alpha
Helix 67	AH4	B	614	620	Right-handed alpha
Helix 68	AH5	B	646	663	Right-handed alpha
Helix 69	AH6	B	685	697	Right-handed alpha
Helix 70	AH7	B	697	708	Right-handed alpha
Helix 71	AH8	B	715	723	Right-handed alpha
Helix 72	AH9	B	724	726	Right-handed 310
Helix 73	AI1	B	738	749	Right-handed alpha
Helix 74	AI2	B	768	826	Right-handed alpha
Helix 75	AI3	B	827	833	Right-handed alpha
Helix 76	AI4	B	837	841	Right-handed 310
Helix 77	AI5	B	842	943	Right-handed alpha
Helix 78	AI6	C	42	57	Right-handed alpha
Helix 79	AI7	C	66	76	Right-handed alpha
Helix 80	AI8	C	81	89	Right-handed alpha
Helix 81	AI9	C	94	98	Right-handed 310
Helix 82	AJ1	C	103	117	Right-handed alpha
Helix 83	AJ2	C	123	132	Right-handed alpha
Helix 84	AJ3	C	143	153	Right-handed alpha
Helix 85	AJ4	C	158	166	Right-handed alpha
Helix 86	AJ5	C	177	185	Right-handed alpha
Helix 87	AJ6	D	42	57	Right-handed alpha
Helix 88	AJ7	D	67	76	Right-handed alpha
Helix 89	AJ8	D	84	89	Right-handed alpha
Helix 90	AJ9	D	93	100	Right-handed alpha
Helix 91	AK1	D	104	106	Right-handed 310
Helix 92	AK2	D	107	118	Right-handed alpha
Helix 93	AK3	D	122	134	Right-handed alpha
Helix 94	AK4	D	143	153	Right-handed alpha
Helix 95	AK5	D	158	167	Right-handed alpha
Helix 96	AK6	D	177	186	Right-handed alpha
Helix 97	AK7	E	23	38	Right-handed alpha
Helix 98	AK8	E	46	57	Right-handed alpha
Helix 99	AK9	E	68	74	Right-handed alpha
Helix 100	AL1	E	79	89	Right-handed alpha
Helix 101	AL2	E	96	108	Right-handed alpha
Helix 102	AL3	E	116	124	Right-handed alpha
Helix 103	AL4	E	125	127	Right-handed 310
Helix 104	AL5	E	132	140	Right-handed alpha
Helix 105	AL6	E	152	162	Right-handed alpha
Helix 106	AL7	F	27	31	Right-handed 310
Helix 107	AL8	F	32	37	Right-handed alpha
Helix 108	AL9	F	47	50	Right-handed 310
Helix 109	AM1	F	51	56	Right-handed alpha
Helix 110	AM2	F	63	74	Right-handed alpha
Helix 111	AM3	F	80	92	Right-handed alpha
Helix 112	AM4	F	96	108	Right-handed alpha
Helix 113	AM5	F	116	128	Right-handed alpha
Helix 114	AM6	F	132	143	Right-handed alpha
Helix 115	AM7	F	152	159	Right-handed alpha

There are 13 sheets in PDB entry 9YRG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	46	53	anti-parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	68	71	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	177	parallel
Strand 5	A	455	461	parallel
Strand 6	A	246	252	anti-parallel
Strand 7	A	258	265	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	373	375	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	580	anti-parallel
Strand 3	A	585	588	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	713	first strand
Strand 2	A	763	765	anti-parallel
Strand 3	A	756	758	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	60	63	anti-parallel
Strand 3	B	46	53	anti-parallel
Strand 4	B	37	40	anti-parallel
Strand 5	B	77	78	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	178	parallel
Strand 5	B	455	461	parallel
Strand 6	B	246	252	anti-parallel
Strand 7	B	261	264	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	577	580	anti-parallel
Strand 3	B	585	588	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	714	first strand
Strand 2	B	762	765	anti-parallel
Strand 3	B	756	758	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	101	102	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	175	176	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YRG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YRG