Analysis of interatomic Contacts of Structural Units in PDB entry:
9YRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YRH entry

There are 6 chains in PDB entry 9YRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LEU 943
B	SER 4	LEU 943
C	ALA 36	SER 187
D	ALA 36	SER 187
E	PHE 22	GLY 163
F	PHE 22	GLY 163

There are106 helices in PDB entry 9YRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed 310
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	97	111	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	153	169	Right-handed alpha
Helix 7	AA7	A	183	201	Right-handed alpha
Helix 8	AA8	A	215	232	Right-handed alpha
Helix 9	AA9	A	283	291	Right-handed alpha
Helix 10	AB1	A	294	301	Right-handed alpha
Helix 11	AB2	A	306	310	Right-handed 310
Helix 12	AB3	A	324	340	Right-handed alpha
Helix 13	AB4	A	342	362	Right-handed alpha
Helix 14	AB5	A	378	389	Right-handed alpha
Helix 15	AB6	A	391	401	Right-handed alpha
Helix 16	AB7	A	416	448	Right-handed alpha
Helix 17	AB8	A	472	495	Right-handed alpha
Helix 18	AB9	A	495	504	Right-handed alpha
Helix 19	AC1	A	517	525	Right-handed alpha
Helix 20	AC2	A	529	540	Right-handed alpha
Helix 21	AC3	A	544	556	Right-handed alpha
Helix 22	AC4	A	592	599	Right-handed alpha
Helix 23	AC5	A	602	611	Right-handed alpha
Helix 24	AC6	A	614	621	Right-handed alpha
Helix 25	AC7	A	646	664	Right-handed alpha
Helix 26	AC8	A	685	696	Right-handed alpha
Helix 27	AC9	A	697	708	Right-handed alpha
Helix 28	AD1	A	715	722	Right-handed alpha
Helix 29	AD2	A	737	748	Right-handed alpha
Helix 30	AD3	A	766	782	Right-handed alpha
Helix 31	AD4	A	783	824	Right-handed alpha
Helix 32	AD5	A	827	841	Right-handed alpha
Helix 33	AD6	A	843	943	Right-handed alpha
Helix 34	AD7	B	4	9	Right-handed 310
Helix 35	AD8	B	12	17	Right-handed alpha
Helix 36	AD9	B	19	29	Right-handed alpha
Helix 37	AE1	B	81	85	Right-handed 310
Helix 38	AE2	B	97	111	Right-handed alpha
Helix 39	AE3	B	135	141	Right-handed alpha
Helix 40	AE4	B	153	169	Right-handed alpha
Helix 41	AE5	B	183	197	Right-handed alpha
Helix 42	AE6	B	202	207	Right-handed alpha
Helix 43	AE7	B	215	232	Right-handed alpha
Helix 44	AE8	B	269	274	Right-handed 310
Helix 45	AE9	B	283	290	Right-handed alpha
Helix 46	AF1	B	295	300	Right-handed alpha
Helix 47	AF2	B	312	316	Right-handed 310
Helix 48	AF3	B	326	339	Right-handed alpha
Helix 49	AF4	B	342	360	Right-handed alpha
Helix 50	AF5	B	378	389	Right-handed alpha
Helix 51	AF6	B	391	401	Right-handed alpha
Helix 52	AF7	B	416	448	Right-handed alpha
Helix 53	AF8	B	472	494	Right-handed alpha
Helix 54	AF9	B	494	504	Right-handed alpha
Helix 55	AG1	B	517	525	Right-handed alpha
Helix 56	AG2	B	529	540	Right-handed alpha
Helix 57	AG3	B	544	557	Right-handed alpha
Helix 58	AG4	B	592	597	Right-handed alpha
Helix 59	AG5	B	602	611	Right-handed alpha
Helix 60	AG6	B	614	620	Right-handed alpha
Helix 61	AG7	B	621	627	Right-handed alpha
Helix 62	AG8	B	646	664	Right-handed alpha
Helix 63	AG9	B	685	697	Right-handed alpha
Helix 64	AH1	B	698	707	Right-handed alpha
Helix 65	AH2	B	714	721	Right-handed alpha
Helix 66	AH3	B	722	726	Right-handed 310
Helix 67	AH4	B	739	747	Right-handed alpha
Helix 68	AH5	B	768	827	Right-handed alpha
Helix 69	AH6	B	827	834	Right-handed alpha
Helix 70	AH7	B	842	943	Right-handed alpha
Helix 71	AH8	C	42	57	Right-handed alpha
Helix 72	AH9	C	66	76	Right-handed alpha
Helix 73	AI1	C	81	89	Right-handed alpha
Helix 74	AI2	C	93	98	Right-handed alpha
Helix 75	AI3	C	103	118	Right-handed alpha
Helix 76	AI4	C	122	134	Right-handed alpha
Helix 77	AI5	C	143	153	Right-handed alpha
Helix 78	AI6	C	158	166	Right-handed alpha
Helix 79	AI7	C	177	186	Right-handed alpha
Helix 80	AI8	D	42	57	Right-handed alpha
Helix 81	AI9	D	67	77	Right-handed alpha
Helix 82	AJ1	D	83	88	Right-handed alpha
Helix 83	AJ2	D	93	99	Right-handed alpha
Helix 84	AJ3	D	104	106	Right-handed 310
Helix 85	AJ4	D	107	116	Right-handed alpha
Helix 86	AJ5	D	122	134	Right-handed alpha
Helix 87	AJ6	D	143	153	Right-handed alpha
Helix 88	AJ7	D	158	167	Right-handed alpha
Helix 89	AJ8	D	177	187	Right-handed alpha
Helix 90	AJ9	E	23	38	Right-handed alpha
Helix 91	AK1	E	46	57	Right-handed alpha
Helix 92	AK2	E	69	74	Right-handed alpha
Helix 93	AK3	E	79	90	Right-handed alpha
Helix 94	AK4	E	96	108	Right-handed alpha
Helix 95	AK5	E	116	126	Right-handed alpha
Helix 96	AK6	E	132	141	Right-handed alpha
Helix 97	AK7	E	152	162	Right-handed alpha
Helix 98	AK8	F	27	35	Right-handed alpha
Helix 99	AK9	F	47	50	Right-handed 310
Helix 100	AL1	F	51	56	Right-handed alpha
Helix 101	AL2	F	63	74	Right-handed alpha
Helix 102	AL3	F	79	91	Right-handed alpha
Helix 103	AL4	F	96	108	Right-handed alpha
Helix 104	AL5	F	116	126	Right-handed alpha
Helix 105	AL6	F	132	143	Right-handed alpha
Helix 106	AL7	F	152	161	Right-handed alpha

There are 14 sheets in PDB entry 9YRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	46	47	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	55	first strand
Strand 2	A	58	63	anti-parallel
Strand 3	A	68	71	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	670	673	parallel
Strand 4	A	176	178	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	246	252	anti-parallel
Strand 3	A	455	461	anti-parallel
Strand 4	A	172	173	parallel
Strand 5	A	666	667	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	373	375	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	584	588	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	714	first strand
Strand 2	A	762	764	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	37	40	anti-parallel
Strand 3	B	77	78	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	53	first strand
Strand 2	B	59	63	anti-parallel
Strand 3	B	68	71	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	178	parallel
Strand 5	B	455	459	parallel
Strand 6	B	248	252	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	577	580	anti-parallel
Strand 3	B	585	588	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	101	102	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	175	176	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YRH