Analysis of interatomic Contacts of Structural Units in PDB entry:
9YUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YUD entry

There are 2 chains in PDB entry 9YUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 664PHE 1078
B
 GLU 666GLN 1079
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9YUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
664 675Right-handed alpha
Helix 2
AA2
A
680 689Right-handed alpha
Helix 3
AA3
A
690 693Right-handed 310
Helix 4
AA4
A
694 707Right-handed alpha
Helix 5
AA5
A
708 713Right-handed alpha
Helix 6
AA6
A
716 730Right-handed alpha
Helix 7
AA7
A
738 755Right-handed alpha
Helix 8
AA8
A
801 805Right-handed 310
Helix 9
AA9
A
807 821Right-handed alpha
Helix 10
AB1
A
829 837Right-handed alpha
Helix 11
AB2
A
838 844Right-handed alpha
Helix 12
AB3
A
848 863Right-handed alpha
Helix 13
AB4
A
864 869Right-handed 310
Helix 14
AB5
A
875 892Right-handed alpha
Helix 15
AB6
A
893 896Right-handed 310
Helix 16
AB7
A
897 909Right-handed alpha
Helix 17
AB8
A
921 938Right-handed alpha
Helix 18
AB9
A
939 943Right-handed 310
Helix 19
AC1
A
944 969Right-handed alpha
Helix 20
AC2
A
983 995Right-handed alpha
Helix 21
AC3
A
995 1006Right-handed alpha
Helix 22
AC4
A
1059 1078Right-handed alpha
Helix 23
AC5
B
667 675Right-handed alpha
Helix 24
AC6
B
680 689Right-handed alpha
Helix 25
AC7
B
690 693Right-handed 310
Helix 26
AC8
B
694 707Right-handed alpha
Helix 27
AC9
B
708 713Right-handed alpha
Helix 28
AD1
B
716 730Right-handed alpha
Helix 29
AD2
B
738 755Right-handed alpha
Helix 30
AD3
B
801 805Right-handed 310
Helix 31
AD4
B
807 821Right-handed alpha
Helix 32
AD5
B
829 837Right-handed alpha
Helix 33
AD6
B
838 844Right-handed alpha
Helix 34
AD7
B
848 863Right-handed alpha
Helix 35
AD8
B
864 869Right-handed 310
Helix 36
AD9
B
875 892Right-handed alpha
Helix 37
AE1
B
893 896Right-handed 310
Helix 38
AE2
B
897 909Right-handed alpha
Helix 39
AE3
B
921 938Right-handed alpha
Helix 40
AE4
B
939 943Right-handed 310
Helix 41
AE5
B
944 969Right-handed alpha
Helix 42
AE6
B
983 995Right-handed alpha
Helix 43
AE7
B
995 1006Right-handed alpha
Helix 44
AE8
B
1059 1079Right-handed alpha
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There are 2 sheets in PDB entry 9YUD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
757 758first strand
Strand 2
A
799 800anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
757 758first strand
Strand 2
B
799 800anti-parallel
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